Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00625 ATGTCGTCCGAAAACGAAAGAATGGAGGAAGAAAACTGGAGGAAATTGGTGAAGGAGATGCTCCCTCCTGGAGTATCTATCCCGGAAAGTGCTGGCGATTTGGATTACTCCATAGCTATGGAGTATGAGGGTCCACCAGTAATCTATGACGTCCCGAGAGTCGAACCTGTTGATGTGAATCCTCATTCGATTCCAATGGCTGAACCTTTATCTGAATCCCAAAGGTCCATTGCTTGTAATGGTCCTCCGATGATTGAACCGATTCCTTTGCCAGTTTCTCGTATTGTTGGTGTCATGAGTTCCCCTACTCAGAGTCCAAGGGTATCAGGAAGTTCGGAGTCTGTAGTATCCGTCCTGCAAAATCGTGATTTCTCTTCAGCTTCACCTTCTGCCTCCCCAGCTTCGGTTCATAACGTTCCTAGCAATCAACCGAGACAAGTGGTTATCGATGCGAGGAGAGCACCTGTTGTCACTTTTAATACTGTCGATCACTCCCATCGAAAGGAACTTAATGTTGAGAAGCAAGTGTATCCAGAGTACATCGGAGTTTCGAAAGAGAAGAAGAAAAAGAAAACTCGAGTATGTTATAGGTGTGGGAAAGGAAAGTGGGAAACGAAGGAGTCGTGTTTAGTTTGTGATGATAAGTATTGCGGTAGCTGTGTCCTTAGAGCCATGGGATCAATGCCTGAAGGGCGTAAATGCGTCACTTGCATCGCTGCTCCTATAGACGAGTCTAAGAGGTCAAAATTGGGCAAGCATTCGAGGGTCTTGTCTCGTTTACTTAGTCCTTTAGAAGTCAAGCAGATTATGAAAGCTGAGAAAGAATGTCCTGCTAATCAGCTTCGTCCCGAACAGCTGATTGTGAATGGATTACCTCTACGGGCTGAAGAGATGGCCGAATTACTCGGATGCCCTCTTCCTCCACAGAAATTGAAACCTGGTAGATACTGGTACGACAAAGAATCCGGTCTCTGGGGAAAGGAAGGAGAAAAACCAGATAGAATCATTTGTTCGAACTTGAGCTTCACCGGCAAGCTTAGCCCCAGTGCAAGCAACGGAAACACCGAAGTTTACATCAACGGTCGAGAAATCACTAGACTCGAACTAAGGGTGCTTAAGTTGGCAAATGTACAATGCCCACGAGACACACATTTTTGGGTCTATGATGACGGTCGGTACGAGGAAGAAGGTCAGAACAATATCAGAGGAAATATTTGGGAGAAGGCTTCGACACGCTTTGTCTGTGCGTTGTTCTCATTGCCTGTGCCACACGGTCAACCACCACCTGGAGTGAGAGAAGAGGCTAGCAATTATACATCAGTTCCCAACTATTTTGAGCAACAAAAAAGGATTCAAAAACTTCTGCTCATCGGGATCGAAGGCTCGGGAACTAGCACCGTCTTTAAGCAGGGAAAATTTTTGTATGGGAACAGATTTAATCAAGAAGAGCTTCAAGATATCAAACTTATGATTCAGAGTAACATGTATAAGTATCTCAGCATCCTGCTGGACGGTCGAGAACGCTTTGAGGAGGAGTTCATAAACCGAAAAAATGCTCCAAATTCTCGGGGCGATCAAGCTCTCGTCACTGATGGAGAGAGGGAGGTTAGCGAATGCATATACTCCATCAACTCGAGGTTAAAACATTTTTCCGATTGGCTTCTCGATATCATCGCTACCGGAGATTTGGATGCATTCTTCCCTGCTGCAACTCGCGAGTATGCTCCATTAGTCGAAGAGCTATGGAAAGATCCTGCGATCCAAGAAACTTACAAGAGAAAAAACGAGCTCCACTTTCTTCCCGATGTTGCCGAGTACTTCTTAAGCAGGGCTGTGGAGGTGTCGAGCAATGAATACGAACCTTCCGATCGAGATATCCTCTACGCAGAGGGGGTGACACAAGGGAACGGATTGGCTTTCATGGAATTTTCACTCGACGATCGGAGTCCAATGTCCGAGACCTACATTGATAATCTCGAAGCTCCACCCCCGCCCCTTACTCGATACCAACTTATAAGGGTAAGTGCTAAGGGGATGAATGAAGGGTGCAAGTGGGTAGAGATGTTCGAAGACGTTCGAGTCGTTGTCTTCTGCGTTGCTCTCAGTGATTTCGATCAGATGTCTCTTGCTGCCGAAGGTAGTGGCAGCGGGAACCTATTACAAAACAAGATGATGCAAAGTAAGGAGCTCTTTGAGACGATGGTCCGACACCCTTGCTTCAAAGATACCCCATTTGTTTTGATACTCAACAAGTACGATCTCTTCGAAGAGAAAGTAAACCGGGTGTCATTGAATGTTTGTGAATGGTTTAACGATTTTAGCCCCGTTCAACCGCTGCACAGCAACCAGTCACTCTCTCATCAAGCTTACTACTACGTAGCCATGAAATTCAAAGACCTTTATCAATCCATCACTGGTCGTAAGCTTTTTGTATGGCAAGCTCGAGCAAGGGACCGAGTGACTATCGACGAAGCATTCAAGTATATAAGAGAAGTTGTTAAGTGGGACGACGAGAAAGAAGAGAACTACTTTGGACCTGAGGATTCCTTCTATAGCACAGGTGAGCTCATCTCCATTTGTTAG 2583 45.68 MSSENERMEEENWRKLVKEMLPPGVSIPESAGDLDYSIAMEYEGPPVIYDVPRVEPVDVNPHSIPMAEPLSESQRSIACNGPPMIEPIPLPVSRIVGVMSSPTQSPRVSGSSESVVSVLQNRDFSSASPSASPASVHNVPSNQPRQVVIDARRAPVVTFNTVDHSHRKELNVEKQVYPEYIGVSKEKKKKKTRVCYRCGKGKWETKESCLVCDDKYCGSCVLRAMGSMPEGRKCVTCIAAPIDESKRSKLGKHSRVLSRLLSPLEVKQIMKAEKECPANQLRPEQLIVNGLPLRAEEMAELLGCPLPPQKLKPGRYWYDKESGLWGKEGEKPDRIICSNLSFTGKLSPSASNGNTEVYINGREITRLELRVLKLANVQCPRDTHFWVYDDGRYEEEGQNNIRGNIWEKASTRFVCALFSLPVPHGQPPPGVREEASNYTSVPNYFEQQKRIQKLLLIGIEGSGTSTVFKQGKFLYGNRFNQEELQDIKLMIQSNMYKYLSILLDGRERFEEEFINRKNAPNSRGDQALVTDGEREVSECIYSINSRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVEELWKDPAIQETYKRKNELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFMEFSLDDRSPMSETYIDNLEAPPPPLTRYQLIRVSAKGMNEGCKWVEMFEDVRVVVFCVALSDFDQMSLAAEGSGSGNLLQNKMMQSKELFETMVRHPCFKDTPFVLILNKYDLFEEKVNRVSLNVCEWFNDFSPVQPLHSNQSLSHQAYYYVAMKFKDLYQSITGRKLFVWQARARDRVTIDEAFKYIREVVKWDDEKEENYFGPEDSFYSTGELISIC 860
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3106169 3111740 - CmoCh06G006250.1 Cmo06g00625 384187

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00625 860 CDD G-alpha 452 836 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cmo06g00625 860 MobiDBLite consensus disorder prediction 124 143 - -
Cmo06g00625 860 ProSiteProfiles G-alpha domain profile. 450 844 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cmo06g00625 860 SUPERFAMILY Transducin (alpha subunit), insertion domain 479 629 IPR011025 GO:0007165
Cmo06g00625 860 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 450 836 IPR027417 -
Cmo06g00625 860 Gene3D - 648 842 IPR027417 -
Cmo06g00625 860 PRINTS Alpha G protein (transducin) signature 453 468 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cmo06g00625 860 PRINTS Alpha G protein (transducin) signature 619 641 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cmo06g00625 860 PRINTS Alpha G protein (transducin) signature 692 720 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cmo06g00625 860 PRINTS Alpha G protein (transducin) signature 745 754 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cmo06g00625 860 PANTHER EXTRA-LARGE GUANINE NUCLEOTIDE-BINDING PROTEIN 3 27 858 - -
Cmo06g00625 860 Pfam G-protein alpha subunit 448 833 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cmo06g00625 860 Gene3D - 480 630 IPR011025 GO:0007165
Cmo06g00625 860 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 27 858 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cmo06g00625 860 SUPERFAMILY FYVE/PHD zinc finger 175 238 IPR011011 -
Cmo06g00625 860 SMART galpha_1 446 833 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00625 - - - csv:101207353 1582.39
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g00625 Cmo16g01243 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00781 Cmo-Chr1:4077242 Cmo06g00625 Cmo-Chr6:3106169 0 dispersed
Cmo01g01753 Cmo-Chr1:13043791 Cmo06g00625 Cmo-Chr6:3106169 6.04E-61 dispersed
Cmo06g00625 Cmo-Chr6:3106169 Cmo07g00750 Cmo-Chr7:3397918 0 dispersed
Cmo16g01243 Cmo-Chr16:8889767 Cmo06g00625 Cmo-Chr6:3106169 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g752 . . Bda06g01242 . . Bpe07g00239 . . Cmo06g00625 Cmo16g01243 . . . . . Cpe14g00990 . . . . . . . . Cla10g00122 Cam10g0120 Cec10g0129 Cco10g0129 Clacu10g0126 Cmu10g0973 Cre10g0383 Cone8ag0500 Cone12ag0501 . . Lsi07g01155 . . Cme06g02435 . . . . . . . Bma12g00240 . . . Cma06g00618 Cma16g01196 Car06g00551 Car16g01126 . . . . . . . . . . . . . . . . . Csa03g00126 Chy06g02179 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002284 3 3 2 2 2 1 3 1 1 2 1 1 3 2 2 3 1 3 3 1 2 2 2 2 2 2 2 4 2 2 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g00625 Cmo_Chr06 FPKM 9.817057 10.177272 8.412066 8.248627 2.238656 2.156796 2.652402 10.532146 9.4387 10.229457