Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00633 ATGAGTAGCAGTGAGATGGAGAAACCACCCAAAGACAAGGAGACCAAGACACCGCCGCTTACCACCCAGGAGCAGACTTCAACCACTAGCGCTGGCGCAGTTAATCCTGATTGGTCGGGATTTCAGGCATATTCTCCGATGCCTCCGCATGGTTTCTTGGCATCAAGCCCCCAAGCCCACCCATATATGTGGGGAGTTCAGCATGTTATGCCTCCTTATGGCACGCCTCCACATCCATATGTTGCAATGTACCCCCCTGGTGGCATATATGCTCATCCTTCCATTCCTCCGGGATCGTATCCTTTTAGCCCATTTGCAATGCCCTCTCCAAATGGCATCACTGAGGCCTCTGGTAATACAGCAGGCAGCTTAGATGGGGAGGGTAAGCCACCTGAAGTGAAGGAAAAGCTTCCAATTAAAAGATCAAAAGGAAGTTTGGGCAGTTTGAACATGATTACGGGGAAGAACAATGAGCTTGGTAAAACATCTGGAATATCTGCCAATGGAGCGTACTCTAAAAGTGGTGAGAGTGCTAGCGAAGGTACAAGTGAAGGAAGCGATGCCAATTCTCAAAATGAATCACAACCTAAGTTAGGTTCCAGGCAAGACACTTTGGAAGGTGAAGCATCTCAGAACGGCAACTCCATGCATGGTGCTCAAAATGGAGGATCTAATACTCAGGCAATGACTGTCATTCCATTGGCTGCTGCTGGGGCCCCGGGAGTCATTCCTGGTCCCACGACCAACTTAAATATTGGAATGGACTATTGGGGTGCATCATCCGCTATCCCTGCAATGCATGGAAAGGTTCCATCAACTCGAGTAGCTGGAGGATTAGTTGGATCTCGGGATAGTGTACAGTCACAGCTTTGGTTGCAGGATGAGAGAGAGCTTAAAAGACAGAGAAGAAAGCAATCAAATAGAGAATCTGCACGGCGATCCCGGTTACGCAAGCAGGCAGAATGTGATGAACTAGGACACCGAGCTGAAGCCTTACAAGAAGAAAATGCCAGTCTTAGGTCTGAAGTGAACCGGATAAGGAGTGAATATGAACAATTACTTTCAGAGAATACTTCTCTGAAGGAACGACTCGGTGAAGTTACGGGAAACGAAGAAGTAAGGGCCAGCAGGAATGGCCAGCATTCGAGTAACGAAACCACACAACTTACAGAGTCGGAGGTTGTACAAGTTGGTAACAAGAATTGA 1206 47.84 MSSSEMEKPPKDKETKTPPLTTQEQTSTTSAGAVNPDWSGFQAYSPMPPHGFLASSPQAHPYMWGVQHVMPPYGTPPHPYVAMYPPGGIYAHPSIPPGSYPFSPFAMPSPNGITEASGNTAGSLDGEGKPPEVKEKLPIKRSKGSLGSLNMITGKNNELGKTSGISANGAYSKSGESASEGTSEGSDANSQNESQPKLGSRQDTLEGEASQNGNSMHGAQNGGSNTQAMTVIPLAAAGAPGVIPGPTTNLNIGMDYWGASSAIPAMHGKVPSTRVAGGLVGSRDSVQSQLWLQDERELKRQRRKQSNRESARRSRLRKQAECDELGHRAEALQEENASLRSEVNRIRSEYEQLLSENTSLKERLGEVTGNEEVRASRNGQHSSNETTQLTESEVVQVGNKN 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3138763 3144626 + CmoCh06G006330.1 Cmo06g00633 384195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00633 401 Pfam bZIP transcription factor 295 357 IPR004827 GO:0003700|GO:0006355
Cmo06g00633 401 PANTHER BZIP TRANSCRIPTION FACTOR FAMILY PROTEIN 1 396 - -
Cmo06g00633 401 SUPERFAMILY Leucine zipper domain 298 354 IPR046347 GO:0003700|GO:0006355
Cmo06g00633 401 SMART brlzneu 295 359 IPR004827 GO:0003700|GO:0006355
Cmo06g00633 401 MobiDBLite consensus disorder prediction 114 225 - -
Cmo06g00633 401 MobiDBLite consensus disorder prediction 146 225 - -
Cmo06g00633 401 MobiDBLite consensus disorder prediction 1 42 - -
Cmo06g00633 401 CDD bZIP_plant_GBF1 300 350 IPR045314 GO:0003700|GO:0006355
Cmo06g00633 401 Pfam G-box binding protein MFMR 1 96 IPR012900 -
Cmo06g00633 401 Coils Coil 315 363 - -
Cmo06g00633 401 MobiDBLite consensus disorder prediction 361 401 - -
Cmo06g00633 401 MobiDBLite consensus disorder prediction 1 18 - -
Cmo06g00633 401 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 297 360 IPR004827 GO:0003700|GO:0006355
Cmo06g00633 401 MobiDBLite consensus disorder prediction 373 401 - -
Cmo06g00633 401 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 302 317 IPR004827 GO:0003700|GO:0006355
Cmo06g00633 401 Gene3D - 298 368 - -
Cmo06g00633 401 Pfam Disordered region downstream of MFMR 135 261 - -
Cmo06g00633 401 MobiDBLite consensus disorder prediction 19 36 - -
Cmo06g00633 401 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 396 IPR044827 GO:0003700|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01685 Cmo06g00633 CCT
Cmo06g00633 Cmo16g01240 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g00796 Cmo-Chr3:6493621 Cmo06g00633 Cmo-Chr6:3138763 1.43E-69 dispersed
Cmo06g00462 Cmo-Chr6:2232267 Cmo06g00633 Cmo-Chr6:3138763 4.60E-08 dispersed
Cmo06g00633 Cmo-Chr6:3138763 Cmo07g00502 Cmo-Chr7:2267677 1.22E-62 dispersed
Cmo14g00286 Cmo-Chr14:1318275 Cmo06g00633 Cmo-Chr6:3138763 3.45E-07 dispersed
Cmo16g01240 Cmo-Chr16:8879499 Cmo06g00633 Cmo-Chr6:3138763 0 wgd
Cmo02g01685 Cmo-Chr2:9670417 Cmo06g00633 Cmo-Chr6:3138763 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9944 PF16596 MFMR_assoc 1.30E-50 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00633 K09060 - csv:101206627 710.294