Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo06g00633 | ATGAGTAGCAGTGAGATGGAGAAACCACCCAAAGACAAGGAGACCAAGACACCGCCGCTTACCACCCAGGAGCAGACTTCAACCACTAGCGCTGGCGCAGTTAATCCTGATTGGTCGGGATTTCAGGCATATTCTCCGATGCCTCCGCATGGTTTCTTGGCATCAAGCCCCCAAGCCCACCCATATATGTGGGGAGTTCAGCATGTTATGCCTCCTTATGGCACGCCTCCACATCCATATGTTGCAATGTACCCCCCTGGTGGCATATATGCTCATCCTTCCATTCCTCCGGGATCGTATCCTTTTAGCCCATTTGCAATGCCCTCTCCAAATGGCATCACTGAGGCCTCTGGTAATACAGCAGGCAGCTTAGATGGGGAGGGTAAGCCACCTGAAGTGAAGGAAAAGCTTCCAATTAAAAGATCAAAAGGAAGTTTGGGCAGTTTGAACATGATTACGGGGAAGAACAATGAGCTTGGTAAAACATCTGGAATATCTGCCAATGGAGCGTACTCTAAAAGTGGTGAGAGTGCTAGCGAAGGTACAAGTGAAGGAAGCGATGCCAATTCTCAAAATGAATCACAACCTAAGTTAGGTTCCAGGCAAGACACTTTGGAAGGTGAAGCATCTCAGAACGGCAACTCCATGCATGGTGCTCAAAATGGAGGATCTAATACTCAGGCAATGACTGTCATTCCATTGGCTGCTGCTGGGGCCCCGGGAGTCATTCCTGGTCCCACGACCAACTTAAATATTGGAATGGACTATTGGGGTGCATCATCCGCTATCCCTGCAATGCATGGAAAGGTTCCATCAACTCGAGTAGCTGGAGGATTAGTTGGATCTCGGGATAGTGTACAGTCACAGCTTTGGTTGCAGGATGAGAGAGAGCTTAAAAGACAGAGAAGAAAGCAATCAAATAGAGAATCTGCACGGCGATCCCGGTTACGCAAGCAGGCAGAATGTGATGAACTAGGACACCGAGCTGAAGCCTTACAAGAAGAAAATGCCAGTCTTAGGTCTGAAGTGAACCGGATAAGGAGTGAATATGAACAATTACTTTCAGAGAATACTTCTCTGAAGGAACGACTCGGTGAAGTTACGGGAAACGAAGAAGTAAGGGCCAGCAGGAATGGCCAGCATTCGAGTAACGAAACCACACAACTTACAGAGTCGGAGGTTGTACAAGTTGGTAACAAGAATTGA | 1206 | 47.84 | MSSSEMEKPPKDKETKTPPLTTQEQTSTTSAGAVNPDWSGFQAYSPMPPHGFLASSPQAHPYMWGVQHVMPPYGTPPHPYVAMYPPGGIYAHPSIPPGSYPFSPFAMPSPNGITEASGNTAGSLDGEGKPPEVKEKLPIKRSKGSLGSLNMITGKNNELGKTSGISANGAYSKSGESASEGTSEGSDANSQNESQPKLGSRQDTLEGEASQNGNSMHGAQNGGSNTQAMTVIPLAAAGAPGVIPGPTTNLNIGMDYWGASSAIPAMHGKVPSTRVAGGLVGSRDSVQSQLWLQDERELKRQRRKQSNRESARRSRLRKQAECDELGHRAEALQEENASLRSEVNRIRSEYEQLLSENTSLKERLGEVTGNEEVRASRNGQHSSNETTQLTESEVVQVGNKN | 401 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 3138763 | 3144626 | + | CmoCh06G006330.1 | Cmo06g00633 | 384195 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo06g00633 | 401 | Pfam | bZIP transcription factor | 295 | 357 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo06g00633 | 401 | PANTHER | BZIP TRANSCRIPTION FACTOR FAMILY PROTEIN | 1 | 396 | - | - | |
Cmo06g00633 | 401 | SUPERFAMILY | Leucine zipper domain | 298 | 354 | IPR046347 | GO:0003700|GO:0006355 | |
Cmo06g00633 | 401 | SMART | brlzneu | 295 | 359 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo06g00633 | 401 | MobiDBLite | consensus disorder prediction | 114 | 225 | - | - | |
Cmo06g00633 | 401 | MobiDBLite | consensus disorder prediction | 146 | 225 | - | - | |
Cmo06g00633 | 401 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
Cmo06g00633 | 401 | CDD | bZIP_plant_GBF1 | 300 | 350 | IPR045314 | GO:0003700|GO:0006355 | |
Cmo06g00633 | 401 | Pfam | G-box binding protein MFMR | 1 | 96 | IPR012900 | - | |
Cmo06g00633 | 401 | Coils | Coil | 315 | 363 | - | - | |
Cmo06g00633 | 401 | MobiDBLite | consensus disorder prediction | 361 | 401 | - | - | |
Cmo06g00633 | 401 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
Cmo06g00633 | 401 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 297 | 360 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo06g00633 | 401 | MobiDBLite | consensus disorder prediction | 373 | 401 | - | - | |
Cmo06g00633 | 401 | ProSitePatterns | Basic-leucine zipper (bZIP) domain signature. | 302 | 317 | IPR004827 | GO:0003700|GO:0006355 | |
Cmo06g00633 | 401 | Gene3D | - | 298 | 368 | - | - | |
Cmo06g00633 | 401 | Pfam | Disordered region downstream of MFMR | 135 | 261 | - | - | |
Cmo06g00633 | 401 | MobiDBLite | consensus disorder prediction | 19 | 36 | - | - | |
Cmo06g00633 | 401 | PANTHER | G-BOX-BINDING FACTOR 3-RELATED | 1 | 396 | IPR044827 | GO:0003700|GO:0006355|GO:0043565 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo02g01685 | Cmo06g00633 | CCT | |
Cmo06g00633 | Cmo16g01240 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo03g00796 | Cmo-Chr3:6493621 | Cmo06g00633 | Cmo-Chr6:3138763 | 1.43E-69 | dispersed | |
Cmo06g00462 | Cmo-Chr6:2232267 | Cmo06g00633 | Cmo-Chr6:3138763 | 4.60E-08 | dispersed | |
Cmo06g00633 | Cmo-Chr6:3138763 | Cmo07g00502 | Cmo-Chr7:2267677 | 1.22E-62 | dispersed | |
Cmo14g00286 | Cmo-Chr14:1318275 | Cmo06g00633 | Cmo-Chr6:3138763 | 3.45E-07 | dispersed | |
Cmo16g01240 | Cmo-Chr16:8879499 | Cmo06g00633 | Cmo-Chr6:3138763 | 0 | wgd | |
Cmo02g01685 | Cmo-Chr2:9670417 | Cmo06g00633 | Cmo-Chr6:3138763 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9944 | PF16596 | MFMR_assoc | 1.30E-50 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo06g00633 | K09060 | - | csv:101206627 | 710.294 |