Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00638 ATGGAGCTTTTTCCAGCTCAACCAGATTTGTCTCTTCAAATAAGCCCTCCAAATTCCTCAACAAATTCAAAGCCCTCTTCCAATGGCGGCTGGAGAAGGCAACATCCCATTTCTTCTATGCCTTCTCAAAACCCTTTAGATTTGGTCTCTTGGAACAATAAATTGCCTTCTACTAACCCTTCTTCTTCTTCTTCTTCTAATTTTGACCCTTCTCCTCTTCTTTCTAACCCTAATTCCTCTTCCGATTTCCTCCACCGCCATTTCCCCACCGCTACCGCTGTGAATGGTGGCGGCGCTGGAACTGGTGGCCTCTTCCACCGCCATCTCCATGATCTTCACCATCAAGGGCTTGGATTCTTGAGACCCATTAGGGGAATTCCGGTTTATCAAAACTCTCCTTCTTCTTCCTCTTCCTCGTCCTTTTCGTACCCGATATTTGGTGGCGGTGGTAACGGTGGCGGTGGCGGTCAGTTTAATTATAACGCCGCCCATCGATCAAGGTTCTTGGGGAGGTTTCCGACTAAACGGAATGTCCGAGCGCCGAGAATGCGGTGGACCACCACTCTACATGCTCGTTTTGTTCATGCTGTTAAGCTTTTGGGTGGCCATGAAAGAGCAACACCAAAATCAGTTCTTGAGCTTATGGATGTCAAAGATCTCACCTTGGCTCATGTCAAGTCCCATTTGCAGATGTATAGAACTGTGAAGACCACTGATAGAGCAGCTTCTTCTGGGAATTCTGATGTTTACGATCAAAATGGGTCATCTAGAGATACGACAAATGAAGACATAACGTATGAAAACGAGAAGTCGTCGAGAATTAGGTCGAGTGTTCCAACTACTGATGATGAGCATGGATATCGAGAAACCGTTGGAGACAAACAAGATCATCAACATCATCATCCTCATAAGGACTTCTATTCTCTATGGAGCAATTCTTCGAGAGAAGCTTTGCTCCAAGGCACAAAAAATCATTCCTTTGAAAACCAACCCTCTCAGCATGATCAGAGTTATTTAGAAGCGAAATGTTCGAGCCACGAAAGAACATCAGATGGAAGCTCATTGACAAATCTTTCAGCTGGAACAAGTCCCGAAAAGCCAAATTTGGAGTTCACGTTAGGACGATCAATTTGA 1134 44.97 MELFPAQPDLSLQISPPNSSTNSKPSSNGGWRRQHPISSMPSQNPLDLVSWNNKLPSTNPSSSSSSNFDPSPLLSNPNSSSDFLHRHFPTATAVNGGGAGTGGLFHRHLHDLHHQGLGFLRPIRGIPVYQNSPSSSSSSSFSYPIFGGGGNGGGGGQFNYNAAHRSRFLGRFPTKRNVRAPRMRWTTTLHARFVHAVKLLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAASSGNSDVYDQNGSSRDTTNEDITYENEKSSRIRSSVPTTDDEHGYRETVGDKQDHQHHHPHKDFYSLWSNSSREALLQGTKNHSFENQPSQHDQSYLEAKCSSHERTSDGSSLTNLSAGTSPEKPNLEFTLGRSI 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3197778 3201505 - CmoCh06G006380.1 Cmo06g00638 384200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00638 377 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 375 IPR044847 GO:0000976|GO:0006355|GO:0010158
Cmo06g00638 377 MobiDBLite consensus disorder prediction 238 306 - -
Cmo06g00638 377 MobiDBLite consensus disorder prediction 348 366 - -
Cmo06g00638 377 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 375 - -
Cmo06g00638 377 Pfam Myb-like DNA-binding domain 182 233 IPR001005 -
Cmo06g00638 377 Gene3D - 180 237 - -
Cmo06g00638 377 MobiDBLite consensus disorder prediction 325 377 - -
Cmo06g00638 377 MobiDBLite consensus disorder prediction 11 81 - -
Cmo06g00638 377 MobiDBLite consensus disorder prediction 238 261 - -
Cmo06g00638 377 SUPERFAMILY Homeodomain-like 178 234 IPR009057 -
Cmo06g00638 377 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 181 234 IPR006447 GO:0003677
Cmo06g00638 377 MobiDBLite consensus disorder prediction 1 81 - -
Cmo06g00638 377 MobiDBLite consensus disorder prediction 325 339 - -
Cmo06g00638 377 MobiDBLite consensus disorder prediction 262 306 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01676 Cmo06g00638 CCT
Cmo06g00638 Cmo19g00231 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01677 Cmo-Chr2:9623204 Cmo06g00638 Cmo-Chr6:3197778 4.71E-17 dispersed
Cmo06g00638 Cmo-Chr6:3197778 Cmo14g00893 Cmo-Chr14:4741964 3.64E-47 dispersed
Cmo16g01233 Cmo-Chr16:8835530 Cmo06g00638 Cmo-Chr6:3197778 5.37E-151 wgd
Cmo19g00231 Cmo-Chr19:1590103 Cmo06g00638 Cmo-Chr6:3197778 3.68E-81 wgd
Cmo02g01676 Cmo-Chr2:9621080 Cmo06g00638 Cmo-Chr6:3197778 1.69E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9945 PF00249 Myb_DNA-binding 1.40E-05 CL0123 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00638 - - csv:101204405 455.677