Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00642 ATGTCGGTTAGGACTGTTAAAGTCAGCAATGTCTCCTTGGGAGCATCTGAACGAGATATCATGGAGTTTTTTTCCTTTTCTGGTGACATTGAATATCTTGAAATGCAGAGTGAAAGTGAACGGTCTCAAATTGCTTATGTGACTTTTAAGGATGTTCAAGGTGCTGAGACTGCTGTTCTTCTGTCTGGAGCAACTATAGTGGATCTTTCTGTCAACATCACTCTGTGTCCTGAATATGAGCTCCCTCCAGAAGCTACCGCGGCACCACCTGCCCCAGGAGCTAAAGAACCTGGTGCTGCTGAATCCGCCTTTCGGAAAGCCGAGGATGTGGTTAGCGGCATGCTTGCCAAGGGCTTTATATTGGGCAAAGATGCAGTCAACTCCGCAAAGGCATTTGATGAGAAACATCAATTATCTTCCACAGCCTCAGCCAAAGTTGCTACATTTGATAAGAAAATTGGGTTCACTGAGAAAATTAGTGCTGGTACATCGTTGGTGAGCGACAAAGTTCGGGAAGTCGACCAGAAGTTTCAGGTTTCGGAGAAGACTAAATCAGCATTTGCAGTTGCAGAGGAAAAAGTTAGCACTGCTGGGTCTGCCATTATGAAAAACCGATACATATTGACCGGGACTAGCTGGGTTACTGGCGCTTTCAGTAAGGTAGCCAAGGCAGCTGGAGAGGTTGGTCAGAAAACAAAAGAGAAAGTCGAGGAGACGGAAGAAGAACAGAGAAAGAAGATGGTCGAAGATTTTGCTGAGGTTCATCTCTCGGAATCCCCTAAAGGAGGAGGAGGAGGAGCAGCAGCAGCAGCAGCATCTGCACCCCCTGAGCCTCAACAACGCCCCAAGCCCGAACCCGCTCAAGGTCTGATTCTCTGA 879 47.44 MSVRTVKVSNVSLGASERDIMEFFSFSGDIEYLEMQSESERSQIAYVTFKDVQGAETAVLLSGATIVDLSVNITLCPEYELPPEATAAPPAPGAKEPGAAESAFRKAEDVVSGMLAKGFILGKDAVNSAKAFDEKHQLSSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVSEKTKSAFAVAEEKVSTAGSAIMKNRYILTGTSWVTGAFSKVAKAAGEVGQKTKEKVEETEEEQRKKMVEDFAEVHLSESPKGGGGGAAAAAASAPPEPQQRPKPEPAQGLIL 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3231369 3233829 - CmoCh06G006420.1 Cmo06g00642 384204

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00642 292 SUPERFAMILY RNA-binding domain, RBD 3 76 IPR035979 GO:0003676
Cmo06g00642 292 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7 66 IPR000504 GO:0003723
Cmo06g00642 292 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 78 IPR000504 GO:0003723
Cmo06g00642 292 MobiDBLite consensus disorder prediction 227 292 - -
Cmo06g00642 292 SMART rrm1_1 5 74 IPR000504 GO:0003723
Cmo06g00642 292 MobiDBLite consensus disorder prediction 227 256 - -
Cmo06g00642 292 PANTHER BINDING PARTNER OF ACD11 1 1 261 - -
Cmo06g00642 292 Gene3D - 2 74 IPR012677 -
Cmo06g00642 292 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 261 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00642 - - - cmos:111431529 459.914
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g00642 Cmo16g01227 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00642 Cmo-Chr6:3231369 Cmo20g00931 Cmo-Chr20:4822403 8.81E-92 dispersed
Cmo16g01227 Cmo-Chr16:8790149 Cmo06g00642 Cmo-Chr6:3231369 4.76E-145 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g710 . . . . . . . . Cmo06g00642 Cmo16g01227 . . . . . Cpe14g00976 . Bhi11g00013 . . . . . . Cla10g00137 Cam10g0136 Cec10g0146 Cco10g0146 Clacu10g0140 Cmu10g0987 Cre10g0398 . Cone12ag0564 . . Lsi07g01175 . . Cme06g02453 Blo03g00876 . Bda07g00083 Bda09g00754 Bpe08g00810 Bpe11g00320 . . . . . Cma06g00637 Cma16g01177 Car06g00568 Car16g01110 . . . . . . . . . . . . . . . . . Csa03g00147 Chy06g02162 .
Vvi8g1245 . . . . . . . . Cmo06g00642 . . . . . . . Cpe08g01390 . . . . . . . . . . . . . . . . Cone13ag0544 . . . . Cme04g02223 . . . . Bpe04g00563 Bpe02g00010 . Bma04g00467 . . . Cma06g00637 . Car06g00568 Car14g00397 Cpe03g00383 . . . . . . . . Cla10g01654 Cam10g1701 Cec10g1754 Cco10g1719 Clacu10g1721 Cmu10g2474 Cre10g1852 Lsi03g01720 Csa03g03595 Chy04g01762 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001653 2 4 2 2 2 2 4 2 2 1 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2 2 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g00642 Cmo_Chr06 FPKM 3.640693 2.361943 10.143585 10.763406 6.431131 5.66982 5.090697 2.048861 1.404314 1.776966