Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00657 ATGACGGATTACCGATTTTCCACCATGAATCTCTGGACCGACGAGAACGCGTCGGCCATGGATGCTTTCACGAACTCCGATCTGTCTTCTTACTGGGCTCCGTCGGCGGCGTCGTCTCAATCTCTCCATCACCCACCTCCGACGCAATCCTCCGCCTCCACCACTACTCCACCGTCCGTCCCTTCCAAGTCTATCGCTGTCTTGAACCAGGAGACTCTGCAGCAGCGCCTCCAGGCGCTCATCGACGGTGCTAGAGAGAGTTGGACGTACGCGATTTTCTGGCAGTCGTCGTATGATTATTCCGGCGGGTCGGTTTTAGGGTGGGGAGATGGGTATTACAAAGGCGAGGAGAATAAAGGGAGAGGAAAAACGAAAATGGTTTCCTCTGCGGCGGAGCAGGCTCACCGGAAGAAGGTGCTCCGGGAGCTTAACTCGTTGATTTCCGGCTCCGCTACCGGACTGGACGATGTGGTGGATGAAGAGGTTACCGACACCGAATGGTTCTTTTTGGTTTCGATGACTCAGTCGTTTGTTAATGGAGTTGGGTTACCGAGTCAGGCGCTTTTAAGCTCCCGGCCGATTTGGATATCCGGCGCCGACCGGCTGTCGGCGTCGGGATGTGATCGCGCTAGACAGGGGAGGATCTTCGGGTTGCAGACGATGGTGTGTATTCCATTACCAAACGGCGTCGTCGAAATGGGTTCGACGGAAGCGATTTACATAACGACGGATTTGATGAACAAGGTCAAGACTCTGTTTAATTTCAACAATCTCGAAACGGGTTCTTGGCAATCGGGAACCACCGGCGTCACTGTCGCCGACGAAGGGGAAAACGACCCATCGTCGTTATGGATCAGTGAGCCGTCGAACACCATTGAAATGAAGGATTCGATTACCACCACCGTACTTTCCGGCGGCGCGTCGGCTAAGCCAATCCATTCAGAAAATCCCAGTTCGAGCAGCTTAACGGAAAATGCCAGCAGGAAACAGACCCCAAGCTTGAATTTCCCCGATTACGCCGCCGCGGCCGCCCCCACGAACCCATCATTCAAGTCGGAATCCGGTGGGATGCTGAGCTTCGGCAACAAAAGTCTCTTCTCCGGTAACTCACAGAATGAGACAAAGAAATCTCCGACTAGTCGGAGAAGCACCGACGAAGGGATACTCTGTTTCACCACCGACGCGATCTTACCCTTTTTCGGGAAGGTAAAATCCGGCGACTCTGACCACTCAGATCCAGAAGCTTCAGCGATTCCAGAAGTGGATAGTTGTATAAAACCATCAGAACCCGAAAAACGACCGAGAAAACGCGGCAGAAAACCGGCGAACGGAAGAGAAGAGCCATTGAATCACGTGGAAGCAGAGAGACAACGCCGGGAAAAACTTAACCAGAAATTCTACGCTCTCCGAGCAGTAGTACCAAACGTATCAAAAATGGACAAAGCCTCATTGCTCGGCGACGCCGTCTCCTACATTAATGAACTGAAATTGAAGCTCGAAATGGCAGAATCAAAGAAGACGGAGATCGAAAAACAGCTAGAATTCATGAAAAAAAACGGCGGAACAGGACGGAAAGACACCGGAAACTACACGAATACAGTAAATGAAGATCTGAAAATGGAGATTCAGGTGAAAATCATGGGGTCGGACGCGATGATCCGAGTTGAATGTAGTAAAAAGAATCATCCGGCGGCGAGATTGATGGCGGCGTTGAAGGATTTGGATTTGGAAATGATTCACGCGAGTGTTTCTGTAGTGAATGATTTGATGATTCAACAGGCAGCGGTGAAGATGGAGAGCAGAGTATATACGACGGAGCAGCTGAAAATGGTGCTGATGGCGGAAGTTCGACGGTGCCGGCGTTGA 1866 51.34 MTDYRFSTMNLWTDENASAMDAFTNSDLSSYWAPSAASSQSLHHPPPTQSSASTTTPPSVPSKSIAVLNQETLQQRLQALIDGARESWTYAIFWQSSYDYSGGSVLGWGDGYYKGEENKGRGKTKMVSSAAEQAHRKKVLRELNSLISGSATGLDDVVDEEVTDTEWFFLVSMTQSFVNGVGLPSQALLSSRPIWISGADRLSASGCDRARQGRIFGLQTMVCIPLPNGVVEMGSTEAIYITTDLMNKVKTLFNFNNLETGSWQSGTTGVTVADEGENDPSSLWISEPSNTIEMKDSITTTVLSGGASAKPIHSENPSSSSLTENASRKQTPSLNFPDYAAAAAPTNPSFKSESGGMLSFGNKSLFSGNSQNETKKSPTSRRSTDEGILCFTTDAILPFFGKVKSGDSDHSDPEASAIPEVDSCIKPSEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQKFYALRAVVPNVSKMDKASLLGDAVSYINELKLKLEMAESKKTEIEKQLEFMKKNGGTGRKDTGNYTNTVNEDLKMEIQVKIMGSDAMIRVECSKKNHPAARLMAALKDLDLEMIHASVSVVNDLMIQQAAVKMESRVYTTEQLKMVLMAEVRRCRR 621
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3318070 3319935 + CmoCh06G006570.1 Cmo06g00657 384219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00657 621 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 446 495 IPR011598 GO:0046983
Cmo06g00657 621 SMART finulus 452 501 IPR011598 GO:0046983
Cmo06g00657 621 MobiDBLite consensus disorder prediction 305 333 - -
Cmo06g00657 621 Pfam Helix-loop-helix DNA-binding domain 450 495 IPR011598 GO:0046983
Cmo06g00657 621 Coils Coil 492 519 - -
Cmo06g00657 621 MobiDBLite consensus disorder prediction 425 456 - -
Cmo06g00657 621 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 445 513 IPR036638 GO:0046983
Cmo06g00657 621 PANTHER TRANSCRIPTION FACTOR MYC2 11 616 - -
Cmo06g00657 621 CDD bHLH_AtAIB_like 443 520 - -
Cmo06g00657 621 PANTHER MYC 11 616 IPR045084 GO:0003700|GO:0006355
Cmo06g00657 621 MobiDBLite consensus disorder prediction 405 456 - -
Cmo06g00657 621 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 73 253 IPR025610 -
Cmo06g00657 621 MobiDBLite consensus disorder prediction 362 385 - -
Cmo06g00657 621 MobiDBLite consensus disorder prediction 37 62 - -
Cmo06g00657 621 Gene3D - 438 521 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01657 Cmo06g00657 CCT
Cmo06g00657 Cmo19g00251 CCT
Cmo06g00657 Cmo16g01208 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00587 Cmo-Chr6:2882458 Cmo06g00657 Cmo-Chr6:3318070 1.31E-09 dispersed
Cmo06g00657 Cmo-Chr6:3318070 Cmo14g02175 Cmo-Chr14:15597259 1.00E-69 dispersed
Cmo07g01299 Cmo-Chr7:7233292 Cmo06g00657 Cmo-Chr6:3318070 2.19E-06 dispersed
Cmo11g01441 Cmo-Chr11:10127297 Cmo06g00657 Cmo-Chr6:3318070 4.96E-18 dispersed
Cmo17g00410 Cmo-Chr17:2712186 Cmo06g00657 Cmo-Chr6:3318070 9.26E-22 dispersed
Cmo19g00526 Cmo-Chr19:6152064 Cmo06g00657 Cmo-Chr6:3318070 6.73E-21 dispersed
Cmo16g01208 Cmo-Chr16:8631197 Cmo06g00657 Cmo-Chr6:3318070 0 wgd
Cmo19g00251 Cmo-Chr19:1832010 Cmo06g00657 Cmo-Chr6:3318070 0 wgd
Cmo02g01657 Cmo-Chr2:9546095 Cmo06g00657 Cmo-Chr6:3318070 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9949 PF14215 bHLH-MYC_N 4.30E-53 CL0161 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00657 K13422 - csv:101205372 905.205