Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00665 ATGGACCCCACTGATGCCGACCTCGCCGATCCTTCTCATGCCCGTCTTTCCGTTTCCTCTGAACCTTCCTCCGCCTCCGCTGCTGGCGCCAAGTACAAGCTACTCTCTCCGGCTAAGCTCCCGATCTCCAGGTCCCCTTGCATTACCATCCCTCCCGGTCTCAGTCCCACTTCCTTTCTCGAGTCTCCCGTTTTGCTCACCAACTTGAAGGTAGAGCCTTCTCCGACTACCGGGTCCTTTACTAAGCTTCCAATGGCACACGACTCCTCTAGCTCAGCTATTTATTCAATGACCACCATGGCTTTCTCAAATACGCATGCCTCAGACGAAGGAAGATCCAGCTATTTCGAGTTCAAACCTTATGCTGGACCGAATATGGTTCCTGCAGATTTGAGTCATCGGAAAGGCGAACAATCCAGTGAAGTTCAAGTTCAGGGCCAACCTCAACCATTTACTGCTCTGCCCATGACTAAAAGTGAGATCAACGTCAATTCTAATGATTTGAGTCGGTCGACTCAGATGGATACAGTTGCCTCGAGGGCTACTGTTCCTGAAGTTGATGGAGACGATTTCAACCATAGTTTGAACACAAATACCAGGGTTCAGCCCCCACAATCTGATCCAAAAGCCAGTGGCATTCAAGTAGTTTCTGATAGGTTATCTGATGATGGATATAACTGGCGTAAGTATGGACAGAAGCATGTTAAAGGGAGTGAATTTCCGCGTAGCTATTATAAATGTACCCATCCTAACTGTGAAGTGAAAAAACTCTTCGAACGCTCTCACGATGGGCAGATAGTCGATATTATCTATAAAGGTACCCATGATCATCCTAAACCTCAGCCAAGTCGGCGATATTCTGCCAGTGCTTCTATGAATGTTCAAGAAGATGGGCCTGATAAGCCTTCACCTTTAACTGGTCAAGATGACAGGTCCTGCATAATATATGCTCCGGTGGTGCGTACCATTGAGCCAAATGGAACTCCAGAACCATCCCATGCTGCTAACGATAGCATGGCCGAAGGCGTAGGAACAACTCTGCCACCCAGGAGTCATGATGAGGTTGACGATGATGACATATTCTCGAAGCGGAGGAAAATGGAACTTGGAGGTTTTGATGTCTGCCCAATGGTTAAGCCGATCAGGGAACCACGTGTTGTGGTTCAAACTCTAAGCGAGGTTGATATACTGGATGATGGGTATCGCTGGCGTAAATACGGCCAGAAGGTAGTGAGAGGAAACCCGAACCCAAGGAGTTATTACAAGTGCACAAATGTTGGATGTCCTGTTAGAAAACATGTTGAAAGAGCATCCCATGACCCAAAAGCTGTAATAACTACATACGAGGGGAAACATAATCACGACGTTCCCACAGCAAAAACGAGTAGCCATGAGGTCCAAGGCTCATTGACAATTGCACCATCAAGGTATAGACTTGAAGAGAGTGACACCATAAGCCTTGATCTTGGCGTTGGCATTGGCGCCGGTGGTGAGAATAGATCGAACGAATACAGGCAGGCATTTCATTCCCAACTTGCTGAAAACCAAAATCCAAATGGCAATTTCAACTTCGAAATAGTTCAAGAAAACTCACCCCCAACCTATTTCGGTGTTCTCGATCGGGGTATAAGCCAGCACGGATCAAGAGAGAGTTTGAGCGAAAGCCGCACCATGTCGCTAAACCATTCCTCTCACCCATATCCTCCTAGCATTGAGAGAATACTAACAGGGCCATAA 1737 47.21 MDPTDADLADPSHARLSVSSEPSSASAAGAKYKLLSPAKLPISRSPCITIPPGLSPTSFLESPVLLTNLKVEPSPTTGSFTKLPMAHDSSSSAIYSMTTMAFSNTHASDEGRSSYFEFKPYAGPNMVPADLSHRKGEQSSEVQVQGQPQPFTALPMTKSEINVNSNDLSRSTQMDTVASRATVPEVDGDDFNHSLNTNTRVQPPQSDPKASGIQVVSDRLSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQIVDIIYKGTHDHPKPQPSRRYSASASMNVQEDGPDKPSPLTGQDDRSCIIYAPVVRTIEPNGTPEPSHAANDSMAEGVGTTLPPRSHDEVDDDDIFSKRRKMELGGFDVCPMVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNVGCPVRKHVERASHDPKAVITTYEGKHNHDVPTAKTSSHEVQGSLTIAPSRYRLEESDTISLDLGVGIGAGGENRSNEYRQAFHSQLAENQNPNGNFNFEIVQENSPPTYFGVLDRGISQHGSRESLSESRTMSLNHSSHPYPPSIERILTGP 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3368431 3373038 + CmoCh06G006650.1 Cmo06g00665 384227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00665 578 SUPERFAMILY WRKY DNA-binding domain 389 457 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo06g00665 578 Gene3D WRKY domain 384 450 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo06g00665 578 ProSiteProfiles WRKY domain profile. 216 280 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo06g00665 578 Pfam WRKY DNA -binding domain 398 454 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo06g00665 578 Pfam WRKY DNA -binding domain 222 278 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo06g00665 578 ProSiteProfiles WRKY domain profile. 392 457 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo06g00665 578 SUPERFAMILY WRKY DNA-binding domain 218 280 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo06g00665 578 MobiDBLite consensus disorder prediction 546 578 - -
Cmo06g00665 578 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 18 553 IPR044810 GO:0003700
Cmo06g00665 578 PANTHER WRKY TRANSCRIPTION FACTOR 20 ISOFORM X1-RELATED 18 553 - -
Cmo06g00665 578 MobiDBLite consensus disorder prediction 324 357 - -
Cmo06g00665 578 MobiDBLite consensus disorder prediction 546 566 - -
Cmo06g00665 578 SMART WRKY_cls 397 456 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo06g00665 578 SMART WRKY_cls 221 279 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo06g00665 578 MobiDBLite consensus disorder prediction 1 27 - -
Cmo06g00665 578 MobiDBLite consensus disorder prediction 272 310 - -
Cmo06g00665 578 Gene3D WRKY domain 211 281 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02919 Cmo-Chr4:20697081 Cmo06g00665 Cmo-Chr6:3368431 1.59E-17 dispersed
Cmo06g00665 Cmo-Chr6:3368431 Cmo16g01037 Cmo-Chr16:7226008 4.83E-90 dispersed
Cmo11g01838 Cmo-Chr11:12836938 Cmo06g00665 Cmo-Chr6:3368431 2.99E-77 transposed
Cmo16g00982 Cmo-Chr16:6726015 Cmo06g00665 Cmo-Chr6:3368431 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9950 PF03106 WRKY 3.30E-25 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00665 - - bhj:120090463 1017.68