Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00666 ATGCAAGAAGCTTCAAGAAAGAAGGTTTCAGATCAATCTCACAGGTTCTATGGACAGCCACAGCAAGAACCTGGATCCTATTACTGGCCTCCTATCAACCAAAATCACTTACCATCTGAGGCTTTCAACCCATATTGCAACCTTGAGTCGTCCTTGGGAACTAGCAGTTACCCACCTCAAAATTCTTCTTCTACTGTTAGCTTCACATCTAATGGAAGCCCTTCACACCAAGAGTGCCATTCATACCCGTTAGAACCGTATTATTCTCCTGACAACAACCGTGGCTCGCCTGTCAGTAGATCTTGCTTAACAGATGATGCTGATGATGACTTGAGGCACAAGATCAGGGAATTGGAGATTGCAATCCTTGGACCAGATTCAGAGATGTTTGATGTCTATTCTGTCTCTAATCCAGTCAATCCTGTGTTATCTGAGCTAGAAGCAGGGTGGAAAGATGTGGCTGAGATAATCTCTAGAAGGGATTTGAAAGAGATGCTTTGTGCTTGTGCTCGAGCAATAGGAGAAAATGATATGTTGGCTGGAGAATGGTTGATATCTGAGTTACGTGGAATGGTCTCGGTTTCGGGTGAGCCAATCCAACGTTTAGGAGCTTACTTGTTAGAGGCACTTGTTGCAAGGACAGCTTCTTCAGGTAGTACTATCTACAAGGCACTAAGATGTAAAGAGCCTATAGGCTCTGAATTGCTCTCATACATGAACATTCTCTACGAAGTTTGCCCTTATTTCAAGTTCGGGTACCTATCAGCAAATGGGGCAATTGCTGAAGCCATAAAAGGTGAAAATAGAGTTCACATAATTGATTTCCAGATAGGTCAGGGAAATCAGTGGATGACATTGATGCAAGCTCTTGCGAATCGGCCTGGAGGGCCCCCAAAGATTACTATCACAGGGATAGATGATTCTACTTCAGCATTTTCTCGAGGAGGGGGCGTCGAGATTGTAGCGAAAAGGTTGTCGAATTTGGCAGAGTCATTGATGGTACCCTTTGAGTTCCATGGAATTGCAGGCTCTGCTTCCGAAATTCAACTAGAAGATCTAAAAGTTCAACCAGGTGAGGCCATTGCTGTGAATTTTGCCTTGGTGCTGCACCATATGACAGATGAAAGTGTCGGCAGTCCGAATCATCGGGATCGAATCCTGCGACTCGTCAAGAGCTTATCTCCAAAAGTTGTGACCGTTGTCGAGCAAGAGTCGAACAACAATACAGCTCCCTTTTTTCCCCGTTTTCTCCAAACATTGAACTATTATACTGCCATTTTCGAGTCCATAGATATGACTCTTCCAAGAGAGCACAAGGAGCGGATCAATGTCGAGCAGCACTGTTTAGCTCGGGACATCGTTAATATAGTGGCATGTGAGGGAGCCGAAAGAGTCGAACGTCATGAACTTCTTGGAAAGTGGAGATCAAGGTTCCTCATGGCAGGGTTTGAGCCACACCCTTTAAGCCCTTTTGTCAACGCTACAATTGAAGCACTGCTAAAGAACTACTGTGACAAGTACACGCTAGAAGAAAGGGATGGAGCCCTATATCTTGGCTGGTTGAATCAAAATCTGGACATCCAACATTTGTGCACTTGTAATAACTCCTGCATATCAGAGATTCAGAACACAGAACCGCCAAGTTGGAAGGGCGCGCAACAGATAAGGAATGACTAA 1677 44.66 MQEASRKKVSDQSHRFYGQPQQEPGSYYWPPINQNHLPSEAFNPYCNLESSLGTSSYPPQNSSSTVSFTSNGSPSHQECHSYPLEPYYSPDNNRGSPVSRSCLTDDADDDLRHKIRELEIAILGPDSEMFDVYSVSNPVNPVLSELEAGWKDVAEIISRRDLKEMLCACARAIGENDMLAGEWLISELRGMVSVSGEPIQRLGAYLLEALVARTASSGSTIYKALRCKEPIGSELLSYMNILYEVCPYFKFGYLSANGAIAEAIKGENRVHIIDFQIGQGNQWMTLMQALANRPGGPPKITITGIDDSTSAFSRGGGVEIVAKRLSNLAESLMVPFEFHGIAGSASEIQLEDLKVQPGEAIAVNFALVLHHMTDESVGSPNHRDRILRLVKSLSPKVVTVVEQESNNNTAPFFPRFLQTLNYYTAIFESIDMTLPREHKERINVEQHCLARDIVNIVACEGAERVERHELLGKWRSRFLMAGFEPHPLSPFVNATIEALLKNYCDKYTLEERDGALYLGWLNQNLDIQHLCTCNNSCISEIQNTEPPSWKGAQQIRND 558
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3372485 3375031 - CmoCh06G006660.1 Cmo06g00666 384228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00666 558 MobiDBLite consensus disorder prediction 52 100 - -
Cmo06g00666 558 Pfam GRAS domain family 163 525 IPR005202 -
Cmo06g00666 558 MobiDBLite consensus disorder prediction 52 78 - -
Cmo06g00666 558 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 32 525 IPR005202 -
Cmo06g00666 558 MobiDBLite consensus disorder prediction 1 33 - -
Cmo06g00666 558 MobiDBLite consensus disorder prediction 14 33 - -
Cmo06g00666 558 ProSiteProfiles GRAS family profile. 153 532 IPR005202 -
Cmo06g00666 558 PANTHER GIBBERELLIN-RESPONSIVE PROTEIN, PUTATIVE-RELATED 32 525 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00224 Cmo-Chr2:1031828 Cmo06g00666 Cmo-Chr6:3372485 0 dispersed
Cmo06g00666 Cmo-Chr6:3372485 Cmo20g00673 Cmo-Chr20:3276967 0 dispersed
Cmo16g00983 Cmo-Chr16:6731154 Cmo06g00666 Cmo-Chr6:3372485 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9951 PF03514 GRAS 8.30E-127 CL0063 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00666 - - csv:101220072 890.952