Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00672 ATGGCTACGTTGCTGAAGAAAGTATGGGAATCGGTGTCCACCCGCTCCGTATTGAGCTTGGAGATGTCGTCTAGTGATCATCGGGGATTTGATGAGTCGTCGTTGGGTGAATTCGATCGGATTCCGATGGATATTCTGATGAACATACTTAAATTAAGTGGCCCCAAAAGCGCGGCAAAGATGGGTATGCTTTGTAAGTCTTGGAGATCTCTTGTTTCTGATAATGGGCTTTGGGTTTTTTTCCTTCAAAACCAGTTGGTGGAGCCTTGGGATTCTATTTTGTTTGGAGAAACTAAGTTGGCTTTGGGGTACCCTCTTGAATCATTCTCTAGTCAGATGATGCCATTGTCATTCATGGAAGTATATAGCAAACGGGTTGCGTTACCGGGATCTGTTATAATTGATGGTGGCTCTGGCTATTGCAAATTCGGTTGGAGCAAATACGATTGTCCCTCGGGGCGTTCTGCAACATTTTTGGAATTTGGGAACATCGAATCTCCCATGTATTCTCGACTTCGACACTTTTTTGCTACTATTTACGGCAGGATGCGAGTTAAAACGTCTCTCCATCCAGTCGTAGTGTCGGTGCCCCTCTGCCATTATGACGATACCGAATCTGCCAAAGCTTCAAGACAGCAGCTCAAAGAGGCCATCCACTCAGTGTTATTTGACATGAACGTCCCTTCTGTTTGTGCCGTTAATCAGGCAACACTAGCTTTGTATGCTGCAAGAAGAACTTCGGGAATTGTTGTTAATATCGGGTTCCAGGTTACTTCAATCGTCCCAATTTTACATGGAAAAGTAATGCGGAAAGTTGGGGTCGAAGTCGTGGGACTGGGAGCTTTAAAGCTTACAGGGCACCTTCGAGAGCTGATGCAACAGAATAATATACGTTTTGAATCAATGTACACCGTTCGAGCATTGAAAGAGAATCTGTGTTATGTTGCTCAAGACTACGAAGCCGAGTTCTCGAAAGATACTCGAGCATCCTCTGAAGCTAATGGGGAAGGTTGGTTTACTCTTTCGAAAGAGCGGTTTCAAACCGGAGAGATCTTATTCCGACCGAGTATGGCAGGAGTGCGAGCAATGGGGCTGCACGAGGCTGTGGCACTTTGTGTGGACCATTGCCATGCTGCAGAACTAACGTGTGATGATTCATGGTTCAAGACTGTGGTTTTGTCGGGCGGCAGTGCTTGTCTTCCAGGACTTGCAGAAAGGTTGCAGAAGGAACTGTATGGGCTTCTTCCTTCTTCCATATCCAATGGTCTCAGAGTCATTCCTCCACCATATGGTGCAGACACAGCTTGGTTTGGGGCGAGGCTTATTAGCAATCTAAGTACCTTCCCTGATCATTGGTGCATTACCAAGAAGCAATTCCGAAAGTCCAAACTCAATCTCATCTGGTGA 1407 45.91 MATLLKKVWESVSTRSVLSLEMSSSDHRGFDESSLGEFDRIPMDILMNILKLSGPKSAAKMGMLCKSWRSLVSDNGLWVFFLQNQLVEPWDSILFGETKLALGYPLESFSSQMMPLSFMEVYSKRVALPGSVIIDGGSGYCKFGWSKYDCPSGRSATFLEFGNIESPMYSRLRHFFATIYGRMRVKTSLHPVVVSVPLCHYDDTESAKASRQQLKEAIHSVLFDMNVPSVCAVNQATLALYAARRTSGIVVNIGFQVTSIVPILHGKVMRKVGVEVVGLGALKLTGHLRELMQQNNIRFESMYTVRALKENLCYVAQDYEAEFSKDTRASSEANGEGWFTLSKERFQTGEILFRPSMAGVRAMGLHEAVALCVDHCHAAELTCDDSWFKTVVLSGGSACLPGLAERLQKELYGLLPSSISNGLRVIPPPYGADTAWFGARLISNLSTFPDHWCITKKQFRKSKLNLIW 468
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3393288 3399277 + CmoCh06G006720.1 Cmo06g00672 384234

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00672 468 SUPERFAMILY Actin-like ATPase domain 245 460 IPR043129 -
Cmo06g00672 468 Pfam F-box domain 38 79 IPR001810 GO:0005515
Cmo06g00672 468 CDD NBD_sugar-kinase_HSP70_actin 132 276 - -
Cmo06g00672 468 Gene3D - 236 434 - -
Cmo06g00672 468 Pfam Actin 204 459 IPR004000 -
Cmo06g00672 468 Gene3D - 32 104 - -
Cmo06g00672 468 PANTHER ACTIN-RELATED PROTEIN 8 90 462 - -
Cmo06g00672 468 SUPERFAMILY F-box domain 26 91 IPR036047 GO:0005515
Cmo06g00672 468 PANTHER ACTIN 90 462 IPR004000 -
Cmo06g00672 468 SUPERFAMILY Actin-like ATPase domain 131 251 IPR043129 -
Cmo06g00672 468 Gene3D Actin; Chain A, domain 4 279 362 - -
Cmo06g00672 468 SMART fbox_2 41 81 IPR001810 GO:0005515
Cmo06g00672 468 SMART actin_3 129 467 IPR004000 -
Cmo06g00672 468 Gene3D - 132 461 - -
Cmo06g00672 468 ProSiteProfiles F-box domain profile. 35 81 IPR001810 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00672 K16616 PARP8; actin-related protein 8, plant - csv:101218880 819.305
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00672 Cmo-Chr6:3393288 Cmo02g00620 Cmo-Chr2:3851300 9.65E-41 dispersed
Cmo16g00987 Cmo-Chr16:6765708 Cmo06g00672 Cmo-Chr6:3393288 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g782 . . . . . . Bma10g00615 . . Cmo06g00672 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1269 Cone15ag1295 . . . . Blo07g00858 . Bda05g00660 . . Bpe03g00737 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006156 1 1 1 4 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 2 2 1 0 1 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g00672 Cmo_Chr06 FPKM 8.323326 8.251557 22.796772 27.015703 6.536303 6.274868 9.920245 9.939967 9.649191 13.01749