Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00676 ATGTATTCCACCACTATTTTTGCAAAGACTGCTGTAGCTGGAGCTGCTGGAATTGAAGTTGGTAGAGTCATTGGAGTGTCTCTTTTGGGATCTTGTTATTTTGGCTTAAACCTCCAAGCCGAAGGCGCTGTTTACCGTCCAGGAAGGAAGGACTTCCATAACATTATACTAAAGGCAAGGAGGAAGGAAGGACAAGATACCCATGATGAATTGCAAAGGAGGAATCTCAGGGACGAGTTAGAAGATCGTGAAAGGAGGCATTTTTCATCAAAGAATAAATCATATGATGATAGAGATCATAGAAAAGGAAGCCAACTTCTGTTAGAAGGCGGAAAGAGAGATATTGAAGATCGTATTATTCCACGAAGTTTAGATGCTGACGATTCTGATGTGGACGTCAAAAGTGACAACGAGAGTGATGATGATGAGGATGACGACGACGAGGATGATACTGAAGCTCTTTTGGCTGAGCTGGAACAAATAAAGAAGGAAAGAGCGGAGGAGAAGCTTCGGAAGGAAAGACAAGAGCGGGAGGAAGAGCTTAAAGTCAAGGAAGCGGAGTTACTCCGAGGAAATCCACTGCTTAACGAGCAACCCGCCTCTTTTAGTGTCAAAAGAAGATGGGACGACGATGTTGTGTTCAAGAATCAGGCCCGTGGCGAAACAAAGACTCCTAAGCGCTTTATAAATGATACCATCAGGAACGACTTCCACCGAAAATTCTTGCACAAGTACATGAAATACCTCGTGCCGCTTAAACCTTCCCTCTCCCGCCGAAACCCTCCTCAGCCGTGCCGTTCAGTGCCGCCGCCGTCGTCGTCATTCTCGATTTTGCTTCTCCGCCGTGCTGCGTCATTCTTCGTCGATCTTCTTCCTTCTCTTGGTCTCAGGTTTATAATGTCCGGTAAAGATAAGAACTTGCATAATATGTCGGAGTCGGATTCCGAACAAGAAGATGTTGGCAAAGAAGGCATTGAATGGATAATGAACCTTCCAGATGTGCCCATGAAGCTCCCACCACATGTAGAATTGCAGAGGACTCGCGTCGAATGCAAAGCCGATGCTCCCATTCATACGGATACGATACAGTATTCTGGAGCATATGCTTCGTTGGGTATTGATAACAGCTTACGACTGGATTCTTTTCGCAAGAACTTCAAAATTGAAGTGATTGATCTCAAAGAGGATGACATGGAATTCGACATGATCGGCATTGACCCATCCCTCGCTAATGCATTTAGGAGAATCCTGATAGCTGAGGTTCCCACTATGGCTATTGAAAAAGTATTGGTTGCTAACAATACATCAATAGTCCAAGATGAAGTGCTTGCCCATAGGTTAGGTCTCATCCCGATTCGTGTTGATCCAAGGCTTTTTGAGTACTCAGATAAAGACACGCCAAATGAGAAGAATACAATTGTTTTTAGACTCCATGTTCGCTGTGAACGTGGAAAACCTCGTCTTACCGCGACGTCAAAAGCATTGACATGGCTACCAAATGGTAGTGAATTTCCTTTGGTATCTGATAAATCAGTTTCAAACACAAAGCCCAAAACATATACTTCTTTTAGTTGCAGCCAAGACACGCTGCCAGAATTTGCCAACAATCCAATTGGTCCAAAGGACGGTGATATTATACTTGCTAGACTCAGCTCGGGTCAGACTAATTATTTATACTGCAAGTACCTTTACTTCCAATTGAAATCCATTTTGGTAGTTCCAGTTCCGGAAATTGAACTTGAAGCTCATGCTGTTAAAGGTATGGGTAAAACACATGCTAAGTGGTCTCCAGTGGCCACTGCTTGGTACAGAATGCTTCCTGAGGTTGTACTTCTGGAAGACATAGAGGATGAGTTGGCAGAAGAACTCAAAAACAAATGTCCTGTTAATGTCTTTGACATTGAAGATATAGCTAATGGTAAGAAAAGGGCAACTGTTGCACGTCCACGAGCTTGCACATTGTGCAGAGAATGCATAAGAGGAGAAGCATGGGAGAAACGTGTCTCATTGCGTCGAGTGAAGGATCATTTCATTTTTAAGATTGAATCAACAGGAGCTTTACCTCCAGAGGTGCTGTTCACTGAAGCTGTAAAGATTTTGGAAGATAAGTGTGAACGTTTAATTGCTGAGCTCTCTTGA 2139 43.53 MYSTTIFAKTAVAGAAGIEVGRVIGVSLLGSCYFGLNLQAEGAVYRPGRKDFHNIILKARRKEGQDTHDELQRRNLRDELEDRERRHFSSKNKSYDDRDHRKGSQLLLEGGKRDIEDRIIPRSLDADDSDVDVKSDNESDDDEDDDDEDDTEALLAELEQIKKERAEEKLRKERQEREEELKVKEAELLRGNPLLNEQPASFSVKRRWDDDVVFKNQARGETKTPKRFINDTIRNDFHRKFLHKYMKYLVPLKPSLSRRNPPQPCRSVPPPSSSFSILLLRRAASFFVDLLPSLGLRFIMSGKDKNLHNMSESDSEQEDVGKEGIEWIMNLPDVPMKLPPHVELQRTRVECKADAPIHTDTIQYSGAYASLGIDNSLRLDSFRKNFKIEVIDLKEDDMEFDMIGIDPSLANAFRRILIAEVPTMAIEKVLVANNTSIVQDEVLAHRLGLIPIRVDPRLFEYSDKDTPNEKNTIVFRLHVRCERGKPRLTATSKALTWLPNGSEFPLVSDKSVSNTKPKTYTSFSCSQDTLPEFANNPIGPKDGDIILARLSSGQTNYLYCKYLYFQLKSILVVPVPEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEDIEDELAEELKNKCPVNVFDIEDIANGKKRATVARPRACTLCRECIRGEAWEKRVSLRRVKDHFIFKIESTGALPPEVLFTEAVKILEDKCERLIAELS 712
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3413687 3423769 + CmoCh06G006760.1 Cmo06g00676 384238

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00676 712 Coils Coil 697 712 - -
Cmo06g00676 712 SUPERFAMILY RBP11-like subunits of RNA polymerase 384 711 IPR036603 GO:0006351|GO:0046983
Cmo06g00676 712 SMART rpoldneu2 397 710 IPR011263 GO:0003899|GO:0006351
Cmo06g00676 712 Gene3D - 580 710 IPR036603 GO:0006351|GO:0046983
Cmo06g00676 712 MobiDBLite consensus disorder prediction 81 150 - -
Cmo06g00676 712 PANTHER BNAA01G22480D PROTEIN 323 555 - -
Cmo06g00676 712 MobiDBLite consensus disorder prediction 81 130 - -
Cmo06g00676 712 Hamap DNA-directed RNA polymerase subunit Rpo3 [rpo3]. 387 711 IPR022842 GO:0003899|GO:0006351
Cmo06g00676 712 Pfam RNA polymerase Rpb3/Rpb11 dimerisation domain 399 704 IPR011263 GO:0003899|GO:0006351
Cmo06g00676 712 PANTHER DNA-DIRECTED RNA POLYMERASE 573 712 - -
Cmo06g00676 712 MobiDBLite consensus disorder prediction 131 150 - -
Cmo06g00676 712 Pfam Cwf15/Cwc15 cell cycle control protein 57 247 IPR006973 GO:0000398|GO:0005681
Cmo06g00676 712 PANTHER BNAA01G22480D PROTEIN 573 712 - -
Cmo06g00676 712 SUPERFAMILY Insert subdomain of RNA polymerase alpha subunit 422 597 IPR036643 -
Cmo06g00676 712 Gene3D - 423 563 IPR036643 -
Cmo06g00676 712 PANTHER DNA-DIRECTED RNA POLYMERASE 323 555 - -
Cmo06g00676 712 Coils Coil 151 187 - -
Cmo06g00676 712 Pfam RNA polymerase Rpb3/RpoA insert domain 430 555 IPR011262 GO:0003899|GO:0006351|GO:0046983
Cmo06g00676 712 CDD RNAP_I_II_AC40 386 710 IPR033901 GO:0001054|GO:0001056
Cmo06g00676 712 ProSitePatterns RNA polymerases D / 30 to 40 Kd subunits signature. 411 451 IPR001514 GO:0003677|GO:0003899|GO:0006351
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00676 K03027 RPAC1, RPC40, POLR1C; DNA-directed RNA polymerases I and III subunit RPAC1 - csv:101203505 694.115
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00676 Cmo-Chr6:3413687 Cmo16g00989 Cmo-Chr16:6786891 2.79E-88 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g692 . . . . . . Bma10g00596 . . Cmo06g00676 . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g00415 . . . . . . . . . . Sed08g2915 . . . . . . . . Bhi11g00465 Tan01g1832 Cmetu06g2791 . . . . . . . . . . . Lsi05g00502 . Chy06g01897 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006783 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g00676 Cmo_Chr06 FPKM 7.389366 7.280437 2.320303 2.017129 5.650944 4.023996 5.1565 0.655077 0.532484 0.582117