Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00678 ATGAAAAGTAAAATGGGTGTGAAGGATCATCAAATCGCAACTCACTCGCCGAATGCCAAAGTAGTAGGCGAGATCGACACTAGTTCACCGTTCCAGTCTGTCAAAGACGCTGTCAACTTGTTTGGTGAGGGTGCTTTCTCAGGTGAACAACCGGTTGTGAGGAAGACGAAGCAACCTCGTTCTGCAGAGAGAGTGTTTGCAAAGGAGACTCAACTCCACTTGACAGAAAAAGAGCTGAAAAAATTAAAGGATCAGCTAAACAATGCTGAGATTACGAAATCCGAAGCGCTTGTTGAACTAGAAAACAATAAACGAGCTGTTGATGAGCTGAACAAGAAGCTGCAATTGCTGAGGGAATCGAAAGAATCTGCCATGAAGGATTCGGAAGTTGCCAAGGCTCGAGCTAAGCAACTTGAGGAGGCAAACGGAAGCAATCATTCTGGAAATGATCCGGGTTGGAAACAAGACTTGGAAACAACTCGAGCTCAGTACATGATAGCAATTGGAGAGCTAGATGCTGCCAAGCACGAATTGAGAAAAAATCGTCAACATTCCGATGCTTCTTTGGAAGCGAAAATTGCTGCGTTGAAACAGGTGACGGCTGCTGAGGAATCGTTCAAAACACACAAGGTGAAAGAAAATGAGCTTTCTAAGGAAATTTTGGCTGCCCAAGAATCTATTGAAAAGCTCAAGCTGGCATCCCTGCAAGCACAGCAAGAGCAAAAGAAGATATTTGCGGAGAAGGACATTCAGAGACGGTCGTATAAAGCAGCTCTTGAAGAGTCGGCGAAAAAACTGTTTTCTTTGCAGAAGGAAATCGATCCTGATATCAGTAGGAATCTTGAATCGCAGCTGAGCGAGACGATGAATGAGATCGGGGAACTGCAGAAACAAATGGAAGATAAAAAAGCTTCGGATTTAGATTCGGTGAAGAATGTCACCTCGGAGCTCGATGATGCAAAAGGGTCCCTACAAAAAGTAGCTGAAGAAGAAAGATCCCTCCATAGCCTGGTTGAAGCTCTGAAGTTGGAACTTGAGAATGTGAGGAAAGAACATTCCGAACTCAAGGAGAGAGAAGCCGAAGCGGAATCTCTTGCTGGTAATTTGCACGTCCAGCTTCGGAAGAGCAAATCTGAACTTGAAGCATACCTCGCAGAAGAATCTAAAGCAAGAGGTGCTTGTGAATATATGCTATCGACTCTCAACCAGCTGTCGTCGGAAACTGAGAACGCTAGACGAGGAGAAGAAGAGATGAAAAAGAAAGCAGAAGAATTGAGGAAGGAAGCAGAAGCCACCAAAATTGCAATGGAAGCAGCTGAGAAGCAGCTGAGACTTGCAGTGGAGGAAGCTGAAGAAGCAAAAGCAGCTGAAGCGAGAGCTCTCAATCAGATTAAGGAACTGTCTGAGAGAACCGATGCGGCACGAGCTTCGACTTCTGATTTTGGGGCTAACATCACTATCTCTAAGGAAGAATTCGAGTCGTTAAGTCGGAAAGTCGAGGAGTCGGACACATTAGCAGAAATGAAAGTGGCTGCTGCATTGGCTCAGGTTGAAGCTGTGAAGGCTAGTGAAAATGAAATTATAAAGAAGTTAGGAGCATCCCAGAAGGAAATTGAGGATATGAAGACTGCAACTGTGGAAGCTTTAAAGAGAGCCGAGATGGCAGAAGCAGCTAAGAAGGCCGTGGAAGGCGAACTCAGAAGATGGCGTGAACGAGAGCAGAAGAAAGCGGAAGAAGCTGCATCGAGAATTTTGGCTGAAACAGAATTGTCTTTGGAATCATCTTCAAGCCACCATAGGCTTCAAAAGCAGAACACGACAGTGAAAACAGTCGAGACGAGCCACAGCAGGTTTCAAAAGCTGAACACGACAGTGAAACGAGTCGAGTCGAAAAAGTTGGAGAAAGAGAAAACCTTTTCAAAGAAGGTACTTTTACCGAACCTTAGCGGGTTATTTGTTAGGAAAAAGAACAAGGTTGAGGGTGGATCTCCCTCATACCTGCCTGGTGAGAAGTCTATGTGA 2022 45.0 MKSKMGVKDHQIATHSPNAKVVGEIDTSSPFQSVKDAVNLFGEGAFSGEQPVVRKTKQPRSAERVFAKETQLHLTEKELKKLKDQLNNAEITKSEALVELENNKRAVDELNKKLQLLRESKESAMKDSEVAKARAKQLEEANGSNHSGNDPGWKQDLETTRAQYMIAIGELDAAKHELRKNRQHSDASLEAKIAALKQVTAAEESFKTHKVKENELSKEILAAQESIEKLKLASLQAQQEQKKIFAEKDIQRRSYKAALEESAKKLFSLQKEIDPDISRNLESQLSETMNEIGELQKQMEDKKASDLDSVKNVTSELDDAKGSLQKVAEEERSLHSLVEALKLELENVRKEHSELKEREAEAESLAGNLHVQLRKSKSELEAYLAEESKARGACEYMLSTLNQLSSETENARRGEEEMKKKAEELRKEAEATKIAMEAAEKQLRLAVEEAEEAKAAEARALNQIKELSERTDAARASTSDFGANITISKEEFESLSRKVEESDTLAEMKVAAALAQVEAVKASENEIIKKLGASQKEIEDMKTATVEALKRAEMAEAAKKAVEGELRRWREREQKKAEEAASRILAETELSLESSSSHHRLQKQNTTVKTVETSHSRFQKLNTTVKRVESKKLEKEKTFSKKVLLPNLSGLFVRKKNKVEGGSPSYLPGEKSM 673
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3432833 3435223 - CmoCh06G006780.1 Cmo06g00678 384240

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00678 673 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED 9 650 - -
Cmo06g00678 673 Coils Coil 213 240 - -
Cmo06g00678 673 MobiDBLite consensus disorder prediction 405 425 - -
Cmo06g00678 673 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 9 650 - -
Cmo06g00678 673 Coils Coil 552 579 - -
Cmo06g00678 673 MobiDBLite consensus disorder prediction 409 425 - -
Cmo06g00678 673 Coils Coil 278 305 - -
Cmo06g00678 673 Coils Coil 401 470 - -
Cmo06g00678 673 MobiDBLite consensus disorder prediction 121 136 - -
Cmo06g00678 673 MobiDBLite consensus disorder prediction 121 153 - -
Cmo06g00678 673 Pfam Weak chloroplast movement under blue light 24 575 IPR008545 -
Cmo06g00678 673 Coils Coil 310 365 - -
Cmo06g00678 673 MobiDBLite consensus disorder prediction 1 21 - -
Cmo06g00678 673 Coils Coil 65 141 - -
Cmo06g00678 673 MobiDBLite consensus disorder prediction 590 616 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00678 - - - cmax:111498357 1134.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00678 Cmo-Chr6:3432833 Cmo18g00607 Cmo-Chr18:7392543 3.89E-102 dispersed
Cmo16g00995 Cmo-Chr16:6860685 Cmo06g00678 Cmo-Chr6:3432833 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g687 . . . . Bpe09g00119 . . . . Cmo06g00678 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1256 Cone15ag1278 . Csa03g00417 . . . Blo10g00872 . Bda12g00972 . . . . . . . . . . . Cpe14g00781 . Bhi11g00468 . . . . . . . . . . . . . . . Chy06g01895 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005145 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 6 2 1 1 1 1 1 1 1 0 4 2 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g00678 Cmo_Chr06 FPKM 13.198895 15.149199 17.646559 19.442142 2.290924 1.751482 2.122679 14.73947 15.070156 13.931997