Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00682 ATGAATCTGAAGCATTTGGTTTCAGCTTTGAATGTATTGTTAACTACAAACAAGTCATCCCCTGCCAACAGCAACCACCAGCAATCAAATAGTAGAAACGTTGCGGCCAAGTCCCCTGTGACTGGCTCTACCCCTGCCTCAATCGCTGCCACCAACAATGAGCAGAGCCAACAATGCATTGTGCGGGAGCAGGACCAATACATGCCAATCGCTAATATGATACGCATTATGCGACGAATTTTACCCTCTCATGCAAAGATATCTGATGATGCAAAGGAAATCATCCAAGAATGTGTGTCTGAGTATATCAGCTTCATTACTAGCGAGGCCAACGAGCAATGCCAAAGGGAGCAACGTAAGACAGTGACAGCAGAGGATGTCCTTTGGGCCATGGGGAAGCTAGGGTTTGACAATTACATTAAGCCATTAATTGTCTTTCTCAATTGCTATCGCGAGTTGGAGAGTGATCGAATCCGTACAGAACCGATCATGAGGCGCAATGTAGATTATGGACCACACGTAGGGATGATATCACCGTATGGCCAGACGTTTCAGATAGGGCACGTCCCAACAGAAATGTTTGATGCAATGGGTAGGTACTACGATGGAGGTGGCAATGGCGGGTCGAGCTCGGGCAATGATAGTCAACTTTGA 654 46.64 MNLKHLVSALNVLLTTNKSSPANSNHQQSNSRNVAAKSPVTGSTPASIAATNNEQSQQCIVREQDQYMPIANMIRIMRRILPSHAKISDDAKEIIQECVSEYISFITSEANEQCQREQRKTVTAEDVLWAMGKLGFDNYIKPLIVFLNCYRELESDRIRTEPIMRRNVDYGPHVGMISPYGQTFQIGHVPTEMFDAMGRYYDGGGNGGSSSGNDSQL 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3468038 3468691 + CmoCh06G006820.1 Cmo06g00682 384244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00682 217 Gene3D Histone, subunit A 54 169 IPR009072 GO:0046982
Cmo06g00682 217 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 68 131 IPR003958 -
Cmo06g00682 217 PRINTS CCAAT-binding transcription factor subunit A signature 95 113 - -
Cmo06g00682 217 PRINTS CCAAT-binding transcription factor subunit A signature 114 132 - -
Cmo06g00682 217 PRINTS CCAAT-binding transcription factor subunit A signature 133 151 - -
Cmo06g00682 217 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-9 35 182 - -
Cmo06g00682 217 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 35 182 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cmo06g00682 217 ProSitePatterns NF-YB/HAP3 subunit signature. 98 114 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cmo06g00682 217 SUPERFAMILY Histone-fold 64 157 IPR009072 GO:0046982
Cmo06g00682 217 MobiDBLite consensus disorder prediction 17 55 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00682 Cmo-Chr6:3468038 Cmo14g00178 Cmo-Chr14:811623 9.92E-44 dispersed
Cmo06g00682 Cmo-Chr6:3468038 Cmo06g00683 Cmo-Chr6:3472988 1.79E-123 tandem
Cmo16g01003 Cmo-Chr16:6904163 Cmo06g00682 Cmo-Chr6:3468038 4.40E-99 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9952 PF00808 CBFD_NFYB_HMF 1.30E-24 CL0012 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00682 K08065 - csv:116402762 292.737