Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00683 ATGGAATGTGGTGGTGCAGCAGGAGGTAGAGATGGCTTCCATAGCTACAGAAGGCAACAACCTAAGCCAACCTCGGCTTTGAATGTATTGTTGACCACAAATAAGTCATCCTCTGCCAACAACACTCACAACAGCAACCACCAGCAATCAAATAGTCGAAACGTTGCGGCCAACTCCCCTGTGACTGGCTCTATCCCTGCCTCGATCGCTGCTACCAACAATGAGCAGAGCCAACAATGCATTGTGCGGGAGCAAGACCAATATATGCCGATCGCTAATGTGATACGCATCATGCGACGAATCTTACCCTCTCATGCAAAGATATCTGATGATGCAAAGGAAACCATCCAAGAATGCGTGTCTGAGTACATCAGCTTCATTACTGGTGAGGCCAACGAGCGATGCCAAAGGGAGCAGCGTAAGACAGTAACAGCAGAGGATGTCCTTTGGGCCATGGGGAAGCTAGGGTTTGACGATTACATTGAGCCATTAACTGTCTTTCTCAATCGCTACCGCGAGTCGGAGAGTGATCGAATGCGTACGGAACCGATCCTGAGGCGCAATGTAGATTATGGACCACAAGTCGGGATGGTAACACCGTATGGCCAGACATTTCAGATAGGGCACGTCCCAATAGGAATGTTTGATGCAATGGGCGGGTACTACGATGGAGGTGGCAATGGCGGGTCGAGCTCGGGCAATGGTAGTCAACTTTGA 717 49.93 MECGGAAGGRDGFHSYRRQQPKPTSALNVLLTTNKSSSANNTHNSNHQQSNSRNVAANSPVTGSIPASIAATNNEQSQQCIVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRMRTEPILRRNVDYGPQVGMVTPYGQTFQIGHVPIGMFDAMGGYYDGGGNGGSSSGNGSQL 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3472988 3474614 + CmoCh06G006830.1 Cmo06g00683 384245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00683 238 MobiDBLite consensus disorder prediction 1 24 - -
Cmo06g00683 238 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 56 216 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cmo06g00683 238 SUPERFAMILY Histone-fold 85 178 IPR009072 GO:0046982
Cmo06g00683 238 PRINTS CCAAT-binding transcription factor subunit A signature 116 134 - -
Cmo06g00683 238 PRINTS CCAAT-binding transcription factor subunit A signature 135 153 - -
Cmo06g00683 238 PRINTS CCAAT-binding transcription factor subunit A signature 154 172 - -
Cmo06g00683 238 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-9 56 216 - -
Cmo06g00683 238 MobiDBLite consensus disorder prediction 36 63 - -
Cmo06g00683 238 Gene3D Histone, subunit A 74 189 IPR009072 GO:0046982
Cmo06g00683 238 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 89 152 IPR003958 -
Cmo06g00683 238 ProSitePatterns NF-YB/HAP3 subunit signature. 119 135 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g00683 Cmo16g01006 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00683 Cmo-Chr6:3472988 Cmo16g01003 Cmo-Chr16:6904163 5.47E-105 dispersed
Cmo06g00683 Cmo-Chr6:3472988 Cmo06g00687 Cmo-Chr6:3488191 5.69E-42 proximal
Cmo06g00682 Cmo-Chr6:3468038 Cmo06g00683 Cmo-Chr6:3472988 1.79E-123 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9953 PF00808 CBFD_NFYB_HMF 3.00E-25 CL0012 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00683 K08065 - csv:116402762 305.449