Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00687 ATGGCGGACTCCGACAACGACTCCGCCGGCGGCAACCAGAAATCGCCGTCGCCGCGGGAGCACGACAGACTCCTCCCAATCGCGAACGTCGGCCGGATTATGAAGAAGGCCCTCCCAGGGAACGCGAAAATCTCAAAGGAAGCCAAAGAGACCGTCCAAGAATGCGTCTCGGAGTTCATCAGTTTCATCACAGGCGAGGCCTCCGACAAGTGCCATAAGGAGAAGCGAAAGACGATCAACGGCGACGATTTGCTTTGGGCCATGGCGACGTTAGGGTTCGAAGATTACGTCGATCCTCTCAAGGTTTACCTCCAGCGTTTTCGAGAAATTGAAGGCGAGAAGACTACGCTCGCCTCGCGCGACGGCGGTAGCGCTTCCGCTTCTACAGCTGCGAATAGTGCGTATTTTGATGGCGGCGCTGAATTTGGTGGTGGGATGGGAACGATGATGACGATGAATATGCCTCCAAGTGTTTATGGTTCTAATGGGCCACGTTGGGATGGGCCTGCATTTAATTCTACGGGTCGGCCCAACTAG 537 55.31 MADSDNDSAGGNQKSPSPREHDRLLPIANVGRIMKKALPGNAKISKEAKETVQECVSEFISFITGEASDKCHKEKRKTINGDDLLWAMATLGFEDYVDPLKVYLQRFREIEGEKTTLASRDGGSASASTAANSAYFDGGAEFGGGMGTMMTMNMPPSVYGSNGPRWDGPAFNSTGRPN 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3488191 3488727 - CmoCh06G006870.1 Cmo06g00687 384249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00687 178 MobiDBLite consensus disorder prediction 1 24 - -
Cmo06g00687 178 Gene3D Histone, subunit A 11 135 IPR009072 GO:0046982
Cmo06g00687 178 MobiDBLite consensus disorder prediction 159 178 - -
Cmo06g00687 178 PRINTS CCAAT-binding transcription factor subunit A signature 52 70 - -
Cmo06g00687 178 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Cmo06g00687 178 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Cmo06g00687 178 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 1 157 - -
Cmo06g00687 178 MobiDBLite consensus disorder prediction 1 15 - -
Cmo06g00687 178 ProSitePatterns NF-YB/HAP3 subunit signature. 55 71 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cmo06g00687 178 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 157 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cmo06g00687 178 SUPERFAMILY Histone-fold 22 123 IPR009072 GO:0046982
Cmo06g00687 178 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 88 IPR003958 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00237 Cmo-Chr2:1117825 Cmo06g00687 Cmo-Chr6:3488191 9.54E-65 dispersed
Cmo06g00687 Cmo-Chr6:3488191 Cmo16g01006 Cmo-Chr16:6914249 4.68E-86 dispersed
Cmo06g00683 Cmo-Chr6:3472988 Cmo06g00687 Cmo-Chr6:3488191 5.69E-42 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9954 PF00808 CBFD_NFYB_HMF 1.10E-27 CL0012 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00687 K08065 - csv:101204640 284.263