Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00688 ATGGGTCAAGAAGATGCAACAAATAATACCTTTGAGAATACAAAAAATGAAGCCAGTGGTGGAGATTTAAAAACAAATACCATTGAGACTGTGGAAAATGGAAACAATAAAGAAGATAAAATGAAAAATAACGTTGAGTCAGTGGACAATGAAACCACTGAAGAAGATAAAATGACAAGTACCACTGAAACTGTGACAAATGGAACCAGTGAACTGGAAAAAGTCAACGAGACTGTGCCTAATGGGTTGGAGAATGGAGTGAAAGAACCGGAAATTGAGCAGTGTACTGATGAGAAGGCAGAGGCCACTAAAATGGAAGAGCAACCTAAGATCAAGGAAGATGAGGAAAGCAATGAAGAAACTGTGAAGGAGGAAAAGGAGGAAGTTGTGCTTCCAAATGACAAGAAGATTGAAGAAAATGTGGATATCAAAGATGAAGAAAATGTGGATGTCAAAGATGTAGAGGATGCCAAGGATGAAGAAATTGAGGCCAAGGACGAAGAAATTGAGGATGCCAAGGATGAAGAAGTTGAGGTCTTCGAGGATGCCAAGGATGAAGAAATTGAGGATGCCAAGGATGAAGAAGTTGAGGATGCCAAGGACGAAGAAGTTGAGGATGCCAAGGATGAAGAAGTTGAGGATGCCAAGGAAGAAGAAATTGAGGATGCCAAGGAAGAAGAAATTGAGGATACCAAGGACAAAGAAATTGAGGATGCCAAAGATGAGGAAAATGAAGAAGAAAAAGAGGATGCTAAAGATAAGGTAGAGAAGGTTGACAGCCATATGGAAGAGGATGACAAGGAATTGAAGGATAAAGATCCCAAGGAAGGGAAAACAAAGAAAGCAAGAAAGAGAAGGGGTGTGGTTAAATCAAAAGGAAAGAATGAAGAGGATGAAAAGGACGAGGTAGAGATAAAGACTCCCATTATTGATCGCCCTGTTCGTGAGCGCAAATCAGTTGAAAGGTTGGTGGCTTCTATAGAAAGATGTGTTGTGAAGGAATTCCATATCGAAAAGGGCCGTGGTACTCCACTTAAAGATATACCCAATGTGGCATTCAAACTCTCAAGGAAGAAGGCTGATGACATCTTCAGGCTGCTTCATTCAATTCTATTTGGAAGGAGAGGAAAGGCATTTCAGATTAAGAGCAACATATCCAGGTTTTCAGGTTTTGTGTGGCATGGAGATGAGGAAAAACAAAAGAATAAAGTCAAAGAAAAATTTGACAAGTGTCATAAAGAGAAATTATTGGAATTGTGTGATGTGCTTGACATTCCTGATGTGAAGGCTACCACAAGAAAGGAAGATGTTATTGGCAAGCTCATAGAATTTTTAATGGCTCCTCATGCTACAAGTACTGTTCTCCTTGCAGAAATAGAAAAGTCAAGCAAGGGTAAAAAGCGTAAAAGGACTGTAAAAGGAGGAATATCAACTCCTGGAGACAATAGTTCAAAACAGTCGGCAAAGAGTCGTAGAAAAAGAGGAAATACTGCAAGATCTGAGATGACAAGAGATACTAGTGATGAAGATGGTGAGTCAGAAGAAGAGAAGGAAGCAGAAGAAGAAAATGACAAGGAAAATGAGAATGGAACCACAGAAAAATCTGATGATGAAATGTCCGAGCAGCCAGAAAGTGAAGATATCAATGACCCAACTGATGAGTCTGAGGAAGAAAAACCCAGATCAAGTTCAAAAGGTTCATCTAGAAAGAGGGGATCTGTAGGAAAAGCAAGAAGCAAGAAAGTTACAAGTTCCAATAAAACCGATTCAGCAAAATCAACATCGAAGAGGTCATCAGCAAGTCGTGCTAAGATTGATGACAGCGATAGTCCTAAGGTATTCTCTAGGAAGAAGAATAGCGAAAAAGTAAGCAAGGCCTCAACTCCACCAAAATCTGCTGCCAAGGAGAAGCCTGGGAAGAAGATTACGAAAGGGAAGGACAAGACCAAGGAGGAGAAAACAAGGCCAAGCGATGATGTGCTTAGGGATGCAATATGTGAAATTCTTAAAGTAGTTGACTTCACTACGGCCACCTTCACCGACATTCTAAAGCAACTTGCTGGGCAATTCAAGATGGATCTCACCGCACAAAAGTCGTCGATAAAACTTATGATCCAAGAAGAGCTCACGAAACTGGCAGATGAAGCAGAAGACGAAGAGGACGGCGAAGGCGACGCCAATGCCGAGAAGGATGGAAAACAGGCCGCTCAAGAGGTGGAAACTTGA 2226 41.02 MGQEDATNNTFENTKNEASGGDLKTNTIETVENGNNKEDKMKNNVESVDNETTEEDKMTSTTETVTNGTSELEKVNETVPNGLENGVKEPEIEQCTDEKAEATKMEEQPKIKEDEESNEETVKEEKEEVVLPNDKKIEENVDIKDEENVDVKDVEDAKDEEIEAKDEEIEDAKDEEVEVFEDAKDEEIEDAKDEEVEDAKDEEVEDAKDEEVEDAKEEEIEDAKEEEIEDTKDKEIEDAKDEENEEEKEDAKDKVEKVDSHMEEDDKELKDKDPKEGKTKKARKRRGVVKSKGKNEEDEKDEVEIKTPIIDRPVRERKSVERLVASIERCVVKEFHIEKGRGTPLKDIPNVAFKLSRKKADDIFRLLHSILFGRRGKAFQIKSNISRFSGFVWHGDEEKQKNKVKEKFDKCHKEKLLELCDVLDIPDVKATTRKEDVIGKLIEFLMAPHATSTVLLAEIEKSSKGKKRKRTVKGGISTPGDNSSKQSAKSRRKRGNTARSEMTRDTSDEDGESEEEKEAEEENDKENENGTTEKSDDEMSEQPESEDINDPTDESEEEKPRSSSKGSSRKRGSVGKARSKKVTSSNKTDSAKSTSKRSSASRAKIDDSDSPKVFSRKKNSEKVSKASTPPKSAAKEKPGKKITKGKDKTKEEKTRPSDDVLRDAICEILKVVDFTTATFTDILKQLAGQFKMDLTAQKSSIKLMIQEELTKLADEAEDEEDGEGDANAEKDGKQAAQEVET 741
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3490881 3498823 - CmoCh06G006880.1 Cmo06g00688 384250

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00688 741 SUPERFAMILY DEK C-terminal domain 649 709 - -
Cmo06g00688 741 MobiDBLite consensus disorder prediction 507 526 - -
Cmo06g00688 741 MobiDBLite consensus disorder prediction 539 553 - -
Cmo06g00688 741 MobiDBLite consensus disorder prediction 634 657 - -
Cmo06g00688 741 Gene3D - 646 711 - -
Cmo06g00688 741 MobiDBLite consensus disorder prediction 712 741 - -
Cmo06g00688 741 MobiDBLite consensus disorder prediction 578 598 - -
Cmo06g00688 741 Coils Coil 209 268 - -
Cmo06g00688 741 PANTHER PROTEIN DEK 196 726 - -
Cmo06g00688 741 Coils Coil 155 175 - -
Cmo06g00688 741 MobiDBLite consensus disorder prediction 599 624 - -
Cmo06g00688 741 MobiDBLite consensus disorder prediction 250 278 - -
Cmo06g00688 741 Coils Coil 509 529 - -
Cmo06g00688 741 MobiDBLite consensus disorder prediction 726 741 - -
Cmo06g00688 741 MobiDBLite consensus disorder prediction 1 302 - -
Cmo06g00688 741 Coils Coil 31 51 - -
Cmo06g00688 741 MobiDBLite consensus disorder prediction 33 58 - -
Cmo06g00688 741 MobiDBLite consensus disorder prediction 152 226 - -
Cmo06g00688 741 MobiDBLite consensus disorder prediction 1 32 - -
Cmo06g00688 741 MobiDBLite consensus disorder prediction 462 657 - -
Cmo06g00688 741 Pfam DEK C terminal domain 656 709 IPR014876 -
Cmo06g00688 741 PANTHER DEK PROTEIN 196 726 IPR044198 GO:0003677|GO:0006325
Cmo06g00688 741 MobiDBLite consensus disorder prediction 59 76 - -
Cmo06g00688 741 MobiDBLite consensus disorder prediction 90 151 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00688 K17046 DEK; protein DEK - csv:101204393 640.188
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00688 Cmo-Chr6:3490881 Cmo10g00041 Cmo-Chr10:199251 2.85E-72 dispersed
Cmo16g01007 Cmo-Chr16:6915305 Cmo06g00688 Cmo-Chr6:3490881 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g658 . . . . . . . Bma13g01112 . Cmo06g00688 . . . . . . . . . . . . . . Cla10g00437 Cam10g0436 Cec10g0458 Cco10g0447 Clacu10g0444 Cmu10g1275 Cre10g0691 . . Cone14ag1216 Cone15ag1237 . . . . . Blo10g00863 . Bda12g00961 . . . . . . . . . . . Cpe14g00791 . . . . . . . . . . . . . . . Lsi05g00493 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007248 1 1 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 1 2 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g00688 Cmo_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0