Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00691 ATGGCTTCCACGGCGGGGGAACAGTCAACCATGGCTTCCTCCAACTCCGACGACGGCCAAGAACAACAACACTACGCTTACGCTGCGCAATTGGTTACCTCAACAGTTCTGCCGATGACACTTCAAGCAGCCTTCGAGCTCGGCTTGTTTGAGATCTTGGCCAAGGCTGGCGATGGGGCCGAGCTGTCTCCGACTGAGATAGCCGCTAAGATAACCACCTCGAACCCGGATGCTGCGTCGATGATCGATCGGATCCTGAGGCTTCTAGCGGCCCACACGGTGGTGGGGTGCTCGGTGATCATTGATGAAAATGGGAATCAGCAGAGATTGTATAGCATTACGCCGGTCGCTAAGTATTTTGTTCTTAACGAAGATGGTGTGTCGTTGGGTCCTATTTTATCGATGATTCAAGATAAAGTCATTCTCCATAGCTGGAGTGAGCTGAAGAATGTTGTGATTGAAGGAGGAGTTCCATTCAATAGGGCTCATGAGGGACTTCATTTCTTTGAATACAATTGTTTGGATCAAAGATTTAATCAAGTTTTCAACAACGCGATGATAAATCACACCACCACGGTCATCAAGATAGTTGTCGAGTCCTACAACGGCTTTGCAAGCCTCAAGCAACTAGTTGATGTTGGTGGTGGTCTCGGGATCACCCTAAAAATCATCACGTCTGCATACCCTTCAATCAAAGGCATCAACTTTGACTTGGCTCATGTCATTCAAGATGCACCATCCTATCCACGTGTAGAACATGTAGCAGGAGACATGTTCGAGAAAATTCCAAACGGAGATGCTATTTTCATGAAGTGGATACTTCACGATTGGAGTGACGACCATTGCGTGAAGCTGTTGAAAAATTGCTATGTCGCCATCCCGGACGACGGGAAGGTCATTGTGATGGAGGGAGTGGCTCCAACGGTGCCAGAGACCACAACCGCAGCGAAAGTCATCATCCAAGGCGATGTGCTTATGATGACTCAAAGCATAGAAGGAAAGGAGCGAACTCGCGATGAATTTAAAGCCCTCGCAGCCAAAGCTGGCTTTAAACACATCAAATTCGTTTGTTTCGTAATTGGCGGTCTACTAAATGCTACTTTTGGAAATGCAACAGAACTCATCATATCAATTTTTGCACTGAAAAATCAAATGATACGTGTTGTTCAGCTATCCTTGCTAGGCTCAATTCTGTCGAACATGTTGCTGGTGCTTGGTTGTGCATTCTTCTGTGGTGGGCTTGTTTTCAACAAAAAGGAACAGACTTTTAACAAGGCAGCTGCTGGTGTCAACTCAGGATTGTTGTTAATGGCTGTCATGGGCCTTCTTTTTCCTGTTCTTCTCAACTACACCCACAGCGAAGCCCATTTTGGGAAGTCGGAATTGGCACTTTCTAGATTCAGCAGTTGCATTATGCTTCTGGCTTATGCTGCTTATCTTTTCTTTCAGTTAAAAACCTTCGAGCTCGGCTTGTTTGAGATCTTGGCCAAGGCCGGCGATGGGGCCGAGCTGTCTCCGATCGAGATAGCCGCTAAGATAACCACGTCGAACCCGGATGCAGCGTCGATGATCGATCGGATCCTGAGGCTTCTGGCGGCCCACTCCGTGGTTGGGTGCTCGGTGATCATCGATGAAAATGGGAATCAGCAAAGATTGTATAGCCTTAAGCCAGTGGCTAAGTATTTCGTTCTTAACGAAGATGGCGTGTCGTTGGGTGCTTTTTTATCGTTGATCCAAGACAAAGTCTCGCTCCAAAGCTGGAGTGAGCTCAAGAATGCTGTCATCGAAGGAGGAGTTCCATTCAATAGGGCTCATGGGGGACTTCATGCCTTCGAATACCCTTGCTTGGATCAAAGATTTAATCAAGTTTTCAACAACGCAATGATAAATAACACTGCCACGGCCATCAAGACAGCTGTCAAATATTACAACGGTTTTGCAAACCTCAAGCAACTAGTTGATGTTGGTGGTGGTCTCGGAGTGACCCTTAAAATCATCGCATCTGCATATCCTTCAATCAAAGGCATCAACTTTGACTTGCCTCATGTCATTCAAGATGCACCGTCCTATCCAGGAGGAGACATGTTTGAGAAAGTTCCGAATGGAGATGCTATTTTTATGAAGTGTGTAATTCATGATTGGAGTGACGAGCAATGCGTGAAGCTATTGAAAAATTGCTACGCTGCGATCCCAGACGATGGGAAGGTAATCGTGATGGAAGGAGTGGTTCCGACGGTGCCGGAGACCACGGACGCAGCCAAAGCCGTCATCCAATGCGATATTCTTATGATGACTCAAAGCATAGGAGGAAGGGAGCGAACTCGCGATGAATTTAAAGCCCTTGCAACCAAAGCTGGCTTTAAATTCATCAAATTCGTCTGTTTCGTTAGGCTGTTACATGGTTGGGCCTAA 2412 46.68 MASTAGEQSTMASSNSDDGQEQQHYAYAAQLVTSTVLPMTLQAAFELGLFEILAKAGDGAELSPTEIAAKITTSNPDAASMIDRILRLLAAHTVVGCSVIIDENGNQQRLYSITPVAKYFVLNEDGVSLGPILSMIQDKVILHSWSELKNVVIEGGVPFNRAHEGLHFFEYNCLDQRFNQVFNNAMINHTTTVIKIVVESYNGFASLKQLVDVGGGLGITLKIITSAYPSIKGINFDLAHVIQDAPSYPRVEHVAGDMFEKIPNGDAIFMKWILHDWSDDHCVKLLKNCYVAIPDDGKVIVMEGVAPTVPETTTAAKVIIQGDVLMMTQSIEGKERTRDEFKALAAKAGFKHIKFVCFVIGGLLNATFGNATELIISIFALKNQMIRVVQLSLLGSILSNMLLVLGCAFFCGGLVFNKKEQTFNKAAAGVNSGLLLMAVMGLLFPVLLNYTHSEAHFGKSELALSRFSSCIMLLAYAAYLFFQLKTFELGLFEILAKAGDGAELSPIEIAAKITTSNPDAASMIDRILRLLAAHSVVGCSVIIDENGNQQRLYSLKPVAKYFVLNEDGVSLGAFLSLIQDKVSLQSWSELKNAVIEGGVPFNRAHGGLHAFEYPCLDQRFNQVFNNAMINNTATAIKTAVKYYNGFANLKQLVDVGGGLGVTLKIIASAYPSIKGINFDLPHVIQDAPSYPGGDMFEKVPNGDAIFMKCVIHDWSDEQCVKLLKNCYAAIPDDGKVIVMEGVVPTVPETTDAAKAVIQCDILMMTQSIGGRERTRDEFKALATKAGFKFIKFVCFVRLLHGWA 803
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3510263 3522175 + CmoCh06G006910.1 Cmo06g00691 384253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00691 803 SUPERFAMILY Winged helix DNA-binding domain 20 122 IPR036390 -
Cmo06g00691 803 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 471 803 IPR016461 GO:0008168
Cmo06g00691 803 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 125 357 IPR029063 -
Cmo06g00691 803 SUPERFAMILY Winged helix DNA-binding domain 470 564 IPR036390 -
Cmo06g00691 803 Pfam Sodium/calcium exchanger protein 358 484 IPR004837 GO:0016021|GO:0055085
Cmo06g00691 803 Gene3D - 5 120 IPR036388 -
Cmo06g00691 803 PANTHER CAFFEIC ACID 3-O-METHYLTRANSFERASE 1-LIKE 486 794 - -
Cmo06g00691 803 Gene3D Vaccinia Virus protein VP39 621 795 IPR029063 -
Cmo06g00691 803 PANTHER O-METHYLTRANSFERASE 20 359 IPR016461 GO:0008168
Cmo06g00691 803 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 568 795 IPR029063 -
Cmo06g00691 803 PANTHER CAFFEIC ACID 3-O-METHYLTRANSFERASE 1-LIKE 20 359 - -
Cmo06g00691 803 Gene3D - 487 639 IPR036388 -
Cmo06g00691 803 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 29 369 IPR016461 GO:0008168
Cmo06g00691 803 PANTHER O-METHYLTRANSFERASE 486 794 IPR016461 GO:0008168
Cmo06g00691 803 Pfam O-methyltransferase domain 145 351 IPR001077 GO:0008171
Cmo06g00691 803 Pfam O-methyltransferase domain 587 788 IPR001077 GO:0008171
Cmo06g00691 803 Gene3D Vaccinia Virus protein VP39 122 361 IPR029063 -
Cmo06g00691 803 Pfam Dimerisation domain 39 90 IPR012967 GO:0046983
Cmo06g00691 803 Pfam Dimerisation domain 487 532 IPR012967 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00691 Cmo-Chr6:3510263 Cmo06g00697 Cmo-Chr6:3536849 0 dispersed
Cmo20g00692 Cmo-Chr20:3416859 Cmo06g00691 Cmo-Chr6:3510263 1.73E-55 dispersed
Cmo06g00691 Cmo-Chr6:3510263 Cmo06g00695 Cmo-Chr6:3530060 1.93E-77 proximal
Cmo06g00690 Cmo-Chr6:3506678 Cmo06g00691 Cmo-Chr6:3510263 0 tandem
Cmo06g00691 Cmo-Chr6:3510263 Cmo06g00692 Cmo-Chr6:3523290 4.16E-40 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00691 K13066 - dcr:108215819 616.305