Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00696 ATGGCTTCCACGGCGAAGGAACAATCAACCATAGCTTCCTCCAACTCCGACGACGGCCAAGAACAACAACACTGCGCTTACGCTGCGCAATTGGTTACCTCAACGGTTCTGCCGATGACACTCCAAGCAGCCTTCGAGCTCGGCTTGTTTGAGATCTTGGCCAAGGCCGGTGATGGGGCCGAGCTGTCTCCGATCGAGATAGCCGCTAAGATAACCATGTCGAACCCGGATGCAGCGTCGATGATCGATCGGATCCTGAGGCTTCTGGCGGCCCACTCCGTGGTTGGGTGCTCGGTGATCATCGATGAAAATGGGAATCAGCAAAGATTGTATAGCCTTAAGCCGGTGGCTAAGTATTTCATTCTTAACGAAGATGGCGTGTCGTTGGGTGCTTTTTTATCGTTGATCCAAGACAAAGTCTCGCTCCAAAGCTGGAGTGAGCTCAAAAATGCTGTCATCAAAGGAGGAGTTCCATTCAATAGGGCTCATGGGGGACTTCATGCCTTCGAATACCCTTGTTTGGATCAAAGATTTAATCAAGTTTTCAACAACGCAATGATAAATAACACTGCCACGGCCATCAAGACAGCTGTCAAATATTACAACGGTTTTGCAAACCTCAAGCAACTAGTTGATGTTGGTGGTGGCCTCGGAGTGACCCTTAAAATCATCACATCTGCATACCCTTCAATCAAAGGCATCAACTTTGACTTGCCTCATGTCATTCAAGATGCACCGTCCTATCCAGGTGTAGAACATGTAGGAGGAGACATGTTTGAGAAAGTTCCAAATGGAGATGCTATTTTTATGAAGTGTGTAATTCATGATTGGAGTGACGAGCAATGCGTGAAGCTATTGAAAAATTGCTACGCTGCGATCCCAGACGATGGGAAGGTAATCGTGATGGAAGGAGTGGTTCCGACGGTGCCGGAGACCACGGACGCAGCCAAAGCCGTCATCCAATGCGATATTCTTATGATGACTCAAAGCATAGGAGGAAGGGAGCGAACTCGGGATGAATTTAAAGCCCTTGCAACCAAAGCTGGCTTTAAATTCATCAAATTCGTCTGTTTCGTAAGCAATCATTGGATCATAGAGTTCTTGAAATGA 1110 47.3 MASTAKEQSTIASSNSDDGQEQQHCAYAAQLVTSTVLPMTLQAAFELGLFEILAKAGDGAELSPIEIAAKITMSNPDAASMIDRILRLLAAHSVVGCSVIIDENGNQQRLYSLKPVAKYFILNEDGVSLGAFLSLIQDKVSLQSWSELKNAVIKGGVPFNRAHGGLHAFEYPCLDQRFNQVFNNAMINNTATAIKTAVKYYNGFANLKQLVDVGGGLGVTLKIITSAYPSIKGINFDLPHVIQDAPSYPGVEHVGGDMFEKVPNGDAIFMKCVIHDWSDEQCVKLLKNCYAAIPDDGKVIVMEGVVPTVPETTDAAKAVIQCDILMMTQSIGGRERTRDEFKALATKAGFKFIKFVCFVSNHWIIEFLK 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3533343 3535765 + CmoCh06G006960.1 Cmo06g00696 384258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00696 369 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 126 367 IPR029063 -
Cmo06g00696 369 PANTHER O-METHYLTRANSFERASE 20 368 IPR016461 GO:0008168
Cmo06g00696 369 Gene3D - 3 120 IPR036388 -
Cmo06g00696 369 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 29 369 IPR016461 GO:0008168
Cmo06g00696 369 PANTHER CAFFEIC ACID 3-O-METHYLTRANSFERASE 1-LIKE 20 368 - -
Cmo06g00696 369 SUPERFAMILY Winged helix DNA-binding domain 20 121 IPR036390 -
Cmo06g00696 369 Pfam Dimerisation domain 39 90 IPR012967 GO:0046983
Cmo06g00696 369 Pfam O-methyltransferase domain 145 351 IPR001077 GO:0008171
Cmo06g00696 369 PIRSF O-mtase 5 369 IPR016461 GO:0008168
Cmo06g00696 369 Gene3D Vaccinia Virus protein VP39 122 369 IPR029063 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00690 Cmo-Chr6:3506678 Cmo06g00696 Cmo-Chr6:3533343 0 dispersed
Cmo06g00696 Cmo-Chr6:3533343 Cmo06g00698 Cmo-Chr6:3540073 0 dispersed
Cmo06g00694 Cmo-Chr6:3529402 Cmo06g00696 Cmo-Chr6:3533343 4.05E-23 proximal
Cmo06g00696 Cmo-Chr6:3533343 Cmo06g00697 Cmo-Chr6:3536849 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00696 K13066 - csv:101214916 518.079