Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00699 ATGGCTTCCACGGCGAAGGAACAGTCAGCCATGGCTTCCTCCAACTCCGACGACAGCCAAGAACAACAACACTACTCTTACGCTGCGCAATTGGTTACCTTATCAGTTCTGCCGATGACACTCCAAGCAGCCTTCGAGCTTGGCTTGTTTGAGATCTTGGCCAAGGCTGGCGATGGGGCCGAGCTGTCTCCGACTGAGATAGCTGCTAAGATAACCACCTCGAACCCGGATGCTGCGTCGATGATCGATCGGATCCTGAGGCTTATGGCGGCCCACTCGGTGGTGGGGTGCTCTGTGATCATTGATGAAAATGGGAATCAGCAGAGATTGTATAGCCTTATGCCGGTGACTAAGTATTTTATTCCGAATGAAGATGGCGTGTCGTTGGGTCCTATTGTATCGATGATCCAAGATAAAGTCTTTCTTCATAGCTGGAGTGAGCTAAAGAATGCCGTGATTGAAGGAGGAGTTCCATTCAATAGGGCTCATGGGGGAGTTCACGCCTTTGAATACCCTCGCTTGGATCAAAGATTTAATCAAATTTTCAACAACGCAATGATAAACTACTCCACTACGGCCATCAAGGCCGTTGTCAAGTGCTACAACGGTTTTGCAAACCTCAAGCAACTAGTTGATGTTGGTGGTGGCCTCGGGGTCACCCTTAAAATCATCACGTCTGCATACCCTTCAATAAAAGGCATCAACTTTGACTTGCCTCATGTTATTCAAGATGCACCTTCCTATCCAGGTGTGGAACATGTAGGAGGAGACATGTTTGAGAAATGGATACTTCACGATTGGAGTGACGAACATTGCGTGAAGCTGTTGAAGAATTGCTACGCCGCGATCCCGAACGATGGAAAGGTAATCGTGATGGAGGGAGTGCTTCCAACGGTGCCTGAGACCTCCGATGCAGCTAAAGGCATCATCCAAGGCGATGTGCTTATGATGACTCAAAACCCAGGAGGAAAGGAGCGAACTCGTGATGAGTTTGAAGCCCTCGCAACCAAAGCTGGGTTTAAACACGTCAAATACTCAACCATAGCTTCCTCCATCTCCGACGACGACCAACAACACCAACACTTCGCTTACGCTATGCAATTGGTTACCTCATCAGTTCTGCCGATGACACTCCAAGCAGCCTTCGAGCTGGGATTGTTTGAGATCTTGGCCAAGGCCGGCAATGGGGCCGAGCTGTCTCCGACTGAGATAACCGCTAAGATAACCACCTCGAACCCGGATGCGGCGTCGATGATCGATCGGATCCTGAGGCTTCTGGCGACCCACTCGGTGGTGGGATGCTCTGTGATCATTGATGAAAATGGGAATCAGCAGAGATTGTATAGCCTTACGCCGGTGGCTAAGTATTTTGTTCTCGATGAAGATGGCGTGTCATTGGGTGCTTTGTTATCGATGATTCAAGATAAAGTCTTTCTCGAGAGCTGGAGTGAGCTGAAGAATGCTGTGATCGAAGGAGGAATTCCATTCAATAGAACCCATGGAGGAGTTCATGCCTTTGAATACCCTCGCTTGGATCAAAGATTTAATCAAGTTTTTAACAACGGAATGATAAATCACACCACCATGGTCATCAAGGTAGTTGTCGAGTCCTACAACGGCTTTGCAAACCTCAAGCAACTAGTTGATGTTGGTGGTGGCCTCGGAGTCACCCTTAAAATCATCACGTCTGCATACCCTTCAATCAAAGGTATCAACTTCGACTTGCCTCATGTTATTGAAGATGCACCATTCTATCCAGCTGTTGAAAAATTGCTACTTGTCCATCCCGGACGACGGAAAGGTAATCGTGATGGAGGGAGTGGTTCCGACGGTGCCGGAGACGACAGCTGCAGAGAAAGCCATCAGCCAAGGCGATTTGCTTATGATGACTCAAAACCCAGGAGGAAAGGAGCGTAA 1917 48.51 MASTAKEQSAMASSNSDDSQEQQHYSYAAQLVTLSVLPMTLQAAFELGLFEILAKAGDGAELSPTEIAAKITTSNPDAASMIDRILRLMAAHSVVGCSVIIDENGNQQRLYSLMPVTKYFIPNEDGVSLGPIVSMIQDKVFLHSWSELKNAVIEGGVPFNRAHGGVHAFEYPRLDQRFNQIFNNAMINYSTTAIKAVVKCYNGFANLKQLVDVGGGLGVTLKIITSAYPSIKGINFDLPHVIQDAPSYPGVEHVGGDMFEKWILHDWSDEHCVKLLKNCYAAIPNDGKVIVMEGVLPTVPETSDAAKGIIQGDVLMMTQNPGGKERTRDEFEALATKAGFKHVKYSTIASSISDDDQQHQHFAYAMQLVTSSVLPMTLQAAFELGLFEILAKAGNGAELSPTEITAKITTSNPDAASMIDRILRLLATHSVVGCSVIIDENGNQQRLYSLTPVAKYFVLDEDGVSLGALLSMIQDKVFLESWSELKNAVIEGGIPFNRTHGGVHAFEYPRLDQRFNQVFNNGMINHTTMVIKVVVESYNGFANLKQLVDVGGGLGVTLKIITSAYPSIKGINFDLPHVIEDAPFYPAVEKLLLVHPGRRKGNRDGGSGSDGAGDDSCRESHQPRRFAYDDSKPRRKGA 638
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3544733 3548723 + CmoCh06G006990.1 Cmo06g00699 384261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00699 638 Gene3D - 3 120 IPR036388 -
Cmo06g00699 638 Gene3D - 349 457 IPR036388 -
Cmo06g00699 638 MobiDBLite consensus disorder prediction 597 638 - -
Cmo06g00699 638 Gene3D Vaccinia Virus protein VP39 122 348 IPR029063 -
Cmo06g00699 638 PANTHER CAFFEIC ACID 3-O-METHYLTRANSFERASE 1-LIKE 356 590 - -
Cmo06g00699 638 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 366 638 IPR016461 GO:0008168
Cmo06g00699 638 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 125 345 IPR029063 -
Cmo06g00699 638 SUPERFAMILY Winged helix DNA-binding domain 19 123 IPR036390 -
Cmo06g00699 638 MobiDBLite consensus disorder prediction 614 638 - -
Cmo06g00699 638 Gene3D Vaccinia Virus protein VP39 459 597 IPR029063 -
Cmo06g00699 638 PANTHER CAFFEIC ACID 3-O-METHYLTRANSFERASE 1-LIKE 17 348 - -
Cmo06g00699 638 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 29 360 IPR016461 GO:0008168
Cmo06g00699 638 PANTHER O-METHYLTRANSFERASE 356 590 IPR016461 GO:0008168
Cmo06g00699 638 Pfam O-methyltransferase domain 145 341 IPR001077 GO:0008171
Cmo06g00699 638 Pfam O-methyltransferase domain 482 585 IPR001077 GO:0008171
Cmo06g00699 638 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 463 588 IPR029063 -
Cmo06g00699 638 SUPERFAMILY Winged helix DNA-binding domain 356 459 IPR036390 -
Cmo06g00699 638 Pfam Dimerisation domain 376 427 IPR012967 GO:0046983
Cmo06g00699 638 Pfam Dimerisation domain 39 90 IPR012967 GO:0046983
Cmo06g00699 638 PANTHER O-METHYLTRANSFERASE 17 348 IPR016461 GO:0008168
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00694 Cmo-Chr6:3529402 Cmo06g00699 Cmo-Chr6:3544733 3.50E-25 dispersed
Cmo06g00697 Cmo-Chr6:3536849 Cmo06g00699 Cmo-Chr6:3544733 5.26E-148 dispersed
Cmo06g00699 Cmo-Chr6:3544733 Cmo18g01376 Cmo-Chr18:12845400 1.18E-80 dispersed
Cmo06g00698 Cmo-Chr6:3540073 Cmo06g00699 Cmo-Chr6:3544733 3.06E-148 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00699 K13066 - csv:101214916 516.924