Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00713 ATGGTCGTGAAGCCGTCGGATGGCGATTCAAAGAACGGGACGCAAGTCGACGATCCTAATGTAATCGATTTGGACATTGACAAGAAATTCCTTGGCCTTCCTATCAAGTCAGCCGTCGACAAGTTTCAACTTATTCCTGCATTTTTTAAGTACTTTGCTACAGGTATGAGAATGCTGAAGAGAGCTGGAAAAATTGGCGAGTTTGTCAATGTGTTTGTGAATGAGAAGCAGATTCCTGGTGAACCAGATGGCTATAACGGGACAAAGTCTCTATTCTTTGTCAAACAACGGAAGCTAGTCCATAAAAATAACTTTCTTCCGAGATGCATATATGTTGGTGTCATGATGAGACAAATGATGGATGCAATTTTAAATAAGGATGCTATGGATGACAAGAAGACAATTGATAAGCTTCTTGGAAAGCACATTAGGTCAAGTCAGTTTGACTTCTCTCAGGTTCTTGCTAGGTTATCTTTTATTTCTACTATGGGTCATGTGACTAGAGTCTCTCCCCACAGTTTGAGAAGTCCAGGAAAGTTAGTAGACGAAGACCATTACAACCTAGTCAGTGGGTGGGGTATGCTTTGTCCATGCGATACTCCAGAAGCGGCTGTTCCTACCAAGAAGTCCTACATTGTCTATTTGGGATCACACTCCTTTGGCCCAAATCCAAGTATATACGACGTCCAACTTGCAACCGAATCTCAATATGATATATTAGGATCCGTCAAGGGAAGCAAATTGGCAGCCAAAGAGTCAATTCTGTACTCCTACAATCGGTACATTAATGGCTTTTCTGCCGTTCTTAATCAACAAGAAGCCGCGGCTCTTGCGAAGAATCCAAGCGTGGTGTCGGTTTTTGAAAACAAGGAAAGAAAATTGCATACAACACGATCATGGGGTTTTCTGGGGGTTGATAGTGATCGAGGAATCCCTCAGAACTCCATTTGGAAGGCTGCTCGGTTTGGGAAAGATACCATCATAGGGAACCTCGACACGGGAGACTTCAGCTATCACATATATTGTGAAGGTGTCTGGCCAGAGTCCCCGAGCTTCAACGATGCAGGGTATGGCCCTGTTCCTTCAAGGTGGAGGGGAGCTTGTGAAGGCGGCTCCAAATTTCGATGCAACAGGAAGTTGATTGGAGCACGCTATTTCTACCGAGGATTTCTAACCGCCGAAGGTCCAGGTACAACGCACAACATCAGCTTCGACAGTGCACGAGACCATGAAGGCCATGGATCGCACACTTTGTCCACTGCGGGTGGCAACTTTGTCCATGGAGTCAATGTGTTTGGCAATGGCAATGGGACTGCAAGAGGAGGTTCCCCCAAGGCTCGTGTTGTTGCGTACAAGGTCTGCTGGCCTTCAAAAACTGGCGGCTGTTACGATTCCGACATCTTAGCAGGCATCGAAGCCGCTATCAGCGACGGTGCGGATGTTCTTTCGGCCTCTCTTGGCACGGCAGCTCAAGAGTTTGCTTATGACGCTATTTCGATAGGGGCGTTCCATGCGGTTCAACACGGAATCGTCGTGGTTTGCTCGGCTGGGAATGACGGCCCGTCTCCCGGGAGTGTGAGCAATGTGTCTCCTTGGATGGTCACTGTTGGAGCTAGTACCATCGACCGTGACTTTGTCAGTTATGTGGTCCTGGGGAACAAGAAGCGATTTAGGGGTTCAAGCCTTTCATCCAGTCGATTGCCGGCTGGTAAGTTTTACCCTTTGATAAAGGCTGTGCAAGTGAAAGCTGCCAATGCCACTGATGGGTTTGCCCAACTTTGCATGGATGGAACACTTGATCCCACAAAGGCAAAAGGCAAGATTATAGTTTGCCTTCGAGGAGAAAATGCAAGAGTGAGCAAGGGCTTCGAGGTTGTTCGTGTCGGTGGTGTCGGGATGGTTCTGGTAAATAAGCAGATGGACGGTTCAGCTCTTGTAGCTGATCCACACATACTTCCTGCTTCTCATCTAAGCTATGCGGATGGAGTTTCCATCGCTCAATATTTGAGCTCCACCAAAATACCCGTGGCTTCCATAACCCATGCAAGCACAGAGATGGGAATTAAACCATCGCCTCTCATGGCTTCATTTTCATCAAGAGGCCCTGATTTCATCACACAGGCTGTAATCAAGGTTGCATCAGGCTTGCCATTTGATAAACGTCGAGTGCCTTTTAACATCGAGTCTGGCACTTCCATGTCATGCCCACACATCTCAGGCGTTGCAGGCCTTCTAAAGACTCTGCATCCCACATGGAGTCCTGGCGCTATTAAATCTGCCATCATGACTACAGCCAAAACTAGAGACAACACCAAGAACACAATGTTGGACTTCAACAAAGTGAAGGCTACCCCATTTGATTATGGTGCAGGACATGTCCATCCAAACGATGCCATGGACCCCGGCCTCGTTTACGACACAACGGTTGATGACTATTTGAATTTCTTATGTACACGGGGCTACAACTCCCTCACACTCAAGAAATTCTCTAACAAGCCATTTGTTTGCGCCAAGAACTTTGCAACCACAGACTTCAACTATCCATCCATCTTGGTCCCCAGGTTGCAAATTGGTGAATCGGTGACGGTCAATAGAAGAGTCAAGAATGTGGGAAGCACAGGCACGTATGTGGCGCGGGTGAGGATGCCCAAGGGCATTACAGTTATGGTTGAGCCAAGTAAGTTGCAATTTCACAGCGTTGGAGAAGAGAAGCCTTTCAAACTTGTATTTCATTACGCACATAAATTGCGACGTGAAGGCTATGTTTTTGGGGCATTGGTATGGTCAGATGGGAAGCATTTTGTTAGGAGTTCTATTGCCGTGAATTTGGTTTGA 2835 46.95 MVVKPSDGDSKNGTQVDDPNVIDLDIDKKFLGLPIKSAVDKFQLIPAFFKYFATGMRMLKRAGKIGEFVNVFVNEKQIPGEPDGYNGTKSLFFVKQRKLVHKNNFLPRCIYVGVMMRQMMDAILNKDAMDDKKTIDKLLGKHIRSSQFDFSQVLARLSFISTMGHVTRVSPHSLRSPGKLVDEDHYNLVSGWGMLCPCDTPEAAVPTKKSYIVYLGSHSFGPNPSIYDVQLATESQYDILGSVKGSKLAAKESILYSYNRYINGFSAVLNQQEAAALAKNPSVVSVFENKERKLHTTRSWGFLGVDSDRGIPQNSIWKAARFGKDTIIGNLDTGDFSYHIYCEGVWPESPSFNDAGYGPVPSRWRGACEGGSKFRCNRKLIGARYFYRGFLTAEGPGTTHNISFDSARDHEGHGSHTLSTAGGNFVHGVNVFGNGNGTARGGSPKARVVAYKVCWPSKTGGCYDSDILAGIEAAISDGADVLSASLGTAAQEFAYDAISIGAFHAVQHGIVVVCSAGNDGPSPGSVSNVSPWMVTVGASTIDRDFVSYVVLGNKKRFRGSSLSSSRLPAGKFYPLIKAVQVKAANATDGFAQLCMDGTLDPTKAKGKIIVCLRGENARVSKGFEVVRVGGVGMVLVNKQMDGSALVADPHILPASHLSYADGVSIAQYLSSTKIPVASITHASTEMGIKPSPLMASFSSRGPDFITQAVIKVASGLPFDKRRVPFNIESGTSMSCPHISGVAGLLKTLHPTWSPGAIKSAIMTTAKTRDNTKNTMLDFNKVKATPFDYGAGHVHPNDAMDPGLVYDTTVDDYLNFLCTRGYNSLTLKKFSNKPFVCAKNFATTDFNYPSILVPRLQIGESVTVNRRVKNVGSTGTYVARVRMPKGITVMVEPSKLQFHSVGEEKPFKLVFHYAHKLRREGYVFGALVWSDGKHFVRSSIAVNLV 944
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3620868 3636732 - CmoCh06G007130.1 Cmo06g00713 384275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00713 944 Gene3D - 97 202 - -
Cmo06g00713 944 Pfam PA domain 585 664 IPR003137 -
Cmo06g00713 944 Gene3D - 542 686 - -
Cmo06g00713 944 Pfam Fibronectin type-III domain 844 941 IPR041469 -
Cmo06g00713 944 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 73 202 - -
Cmo06g00713 944 PANTHER SUBTILISIN-LIKE PROTEASE SBT5.4 209 943 - -
Cmo06g00713 944 SUPERFAMILY Subtilisin-like 294 803 IPR036852 GO:0004252|GO:0006508
Cmo06g00713 944 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 203 295 IPR037045 -
Cmo06g00713 944 CDD PA_subtilisin_like 548 679 - -
Cmo06g00713 944 Gene3D - 816 944 - -
Cmo06g00713 944 Pfam Peptidase inhibitor I9 210 295 IPR010259 -
Cmo06g00713 944 ProSitePatterns Serine proteases, subtilase family, serine active site. 730 740 IPR023828 -
Cmo06g00713 944 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 209 943 IPR045051 -
Cmo06g00713 944 ProSiteProfiles Serine proteases, subtilase domain profile. 299 799 - -
Cmo06g00713 944 Gene3D Peptidase S8/S53 domain 343 812 IPR036852 GO:0004252|GO:0006508
Cmo06g00713 944 Pfam Subtilase family 397 772 IPR000209 GO:0006508|GO:0008236
Cmo06g00713 944 Pfam RNA polymerase Rpb2, domain 3 152 202 IPR007645 GO:0003677|GO:0003899|GO:0006351
Cmo06g00713 944 PRINTS Subtilisin serine protease family (S8) signature 409 422 IPR015500 -
Cmo06g00713 944 PRINTS Subtilisin serine protease family (S8) signature 323 342 IPR015500 -
Cmo06g00713 944 PRINTS Subtilisin serine protease family (S8) signature 729 745 IPR015500 -
Cmo06g00713 944 CDD Peptidases_S8_3 293 765 IPR034197 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g01385 Cmo-Chr4:7050794 Cmo06g00713 Cmo-Chr6:3620868 4.78E-15 dispersed
Cmo06g00713 Cmo-Chr6:3620868 Cmo06g00715 Cmo-Chr6:3644559 0 dispersed
Cmo18g00826 Cmo-Chr18:9647578 Cmo06g00713 Cmo-Chr6:3620868 4.92E-08 dispersed
Cmo06g00709 Cmo-Chr6:3607104 Cmo06g00713 Cmo-Chr6:3620868 0 proximal
Cmo06g00710 Cmo-Chr6:3612674 Cmo06g00713 Cmo-Chr6:3620868 0 proximal
Cmo06g00712 Cmo-Chr6:3617334 Cmo06g00713 Cmo-Chr6:3620868 6.66E-09 tandem
Cmo06g00713 Cmo-Chr6:3620868 Cmo06g00714 Cmo-Chr6:3638578 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00713 - - cmax:111498820 1354.73