Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00719 ATGGGGAGGACTGATGATAACGTTGCTATAATTGGGGATTGGGTGCCTCCAAGTCCCAGTACACGAGCCTTCTTCTCAGCAATGCTAGGGGAGGATGTTGGTTCTAGACCTGCAATGGATACTATCACCATTGATAAAACTGAAGAGCTATTTCAAAGGCCTCGAGAACATCCGGTATCGAACAACACCGTTGCAAGAGGCGGGATCCCAAGTGCCAATTCTGGTGATCGGTCGATGGATTTAAGTTCGTTTTCGGGGCAGAAATTCTGTGGGGGTCTTGTCGAAAGGATTGCTGCCAGAGCTGGATTTAATGCTCCAAGATTGAATACAGAGAGTATTAGATCCACTGATCAATCTCTGGATTCAGATGCCAAGTCTCCTTACTTGACAATACCGCCTGGTCTCAGTCCTACTACATTGCTAGATTCACCTGTTTTTCTTTCTAATTCACTGGCTCAGCAATCTCCCACAACTGGAAAGTTCCCGTTCTTGCCGAATGTTAGTAATCGGAGCTCAATGATGATGTCGGAGGGCGACGATAAAGGCAGCGTCAATCCATTCAACAATAACAGTACATCGTTTGCATTCAGTTCTGGTGTGGAATCTGGATCGTTCTTTTATCTCGGTGCAGCAAGCAAAACAGATTCTGCCACTGTTCTTCCACAATCTTGTCCGAGAATTGAGGTTTCAGTTCCACGTTCAGAAAATTCTTTTCAATCTCATATTGTAGAACCATCTCTGTCTTTACCTCAAAACAGAATCAGTCATCATCCGCAAGTGGGACTCTCTACGTCATGCGTCGAGAGAGATGATGTGGGTAAGACCGTGTCAGATGATCAAAGAACCTTTGATTCTTTGTGTGGTGGTGGTGAACATTCTTCACCACTCGATGAGCAACCGGATGAAGGGGAGCAAAGAGGCAGTGGGGATTCCATGGCTGGTGGTGGTAGTGGCGCCCCCTCGGAGGATGGATATAACTGGAGAAAATATGGACAAAAACAGGTTAAAGGAAGCGAGTACCCTCGTAGTTATTATAAGTGCACGCATCCAAACTGTCAGGTCAAGAAAAAAGTCGAGCGATCTAATGAGGGTCATATAACAGAGATCATCTATAAAGGAACACATAATCACCCAAAGCCCTCGCCCTATCGACGAGCAGCGACCGGACCTTCGGATTCCCATATCAATATGCAACTAGACATTTCTGCACAAGGTGGCCAACAGACTGCTGAAGGTCTCCTTTGGGGAGATTCACAAAAACGGATTCCAAATGGAGCTCCTGATTGGATGCATGAGAACCTTGAGGTGACTTCTTCAGCATCCTTGGGTCCTGAATATGGCAATCAGCCTAATACTTCACAGGCTCAAAATGGCAGTCATGTTGAAACAGTTGAAGCCATTGATGCCTCATCCACATTCTCTAATGATGAAGATGAAGATGATAGGGGCACCCATGGCAGTGTAACATTGGGATATGAGGGGGAAGGAGATGAGTCTGAGTCTAAGAAAAGGAAACTTGACGCTTATGTAACGGAAATGAGCGGGGCCACTAGAGCTATCCGTGAGCCTAGAGTTGTCGTGCAGACTACCAGTGAAGTAGATATTCTGGACGATGGCTATCGCTGGCGCAAATACGGGCAGAAGGTACATCAAATTTCCATGTTTGTGTGTGGTATCATCCTGTCACCAGTTTGTGATGGTGTGTACCAACTGCTTGTGTACAGGAGTTACTACAAGTGCACAAATCCTGGCTGCACAGTGAGGAAGCATGTCGAGCGGGCATCACATGACCTGAAGTCTGTGATCACGACATACGAAGGAAAGCACAATCATGATGTTCCTGCTGCTCGCAACAGCAGCCACATCAGTTCTAGTACATCCAGTCCAGTAACCACACAAAACTCGACCGCAACGACTCAAACTCATATTCACAGACCGGGGCCACCCCAGCCTCAGAACACCATTCCAAGATTTGAAAGGCCAGTGTTTAGCCTTCCTGGAAGACAGCAGATGGGCAGTGCCCATGGGTTCTCTTTTGGAATGAACCCACCTGGACTGAGAAATCTGACAATGGCAGCCGTTGGCCAAGCCAAGCTTCCTGTTCTGCCAATGCATCCATACTTAGCACAAGCACACCATGTTAATGACATGGGTTTCTTGTTGCCAAAAGGAGAGCCCAATGTAGAACCTACATCTGACCTTGGCTTGAACTTTTCCCATGGTTCAACCGTGTATCAGCAAATTATGAGTAGGCTTCCACTTGGACCTGAGATATTTACTCACCATATAGTTTACCTCTTCGCTGAAGAACAACCAGAGGGTTAA 2325 46.62 MGRTDDNVAIIGDWVPPSPSTRAFFSAMLGEDVGSRPAMDTITIDKTEELFQRPREHPVSNNTVARGGIPSANSGDRSMDLSSFSGQKFCGGLVERIAARAGFNAPRLNTESIRSTDQSLDSDAKSPYLTIPPGLSPTTLLDSPVFLSNSLAQQSPTTGKFPFLPNVSNRSSMMMSEGDDKGSVNPFNNNSTSFAFSSGVESGSFFYLGAASKTDSATVLPQSCPRIEVSVPRSENSFQSHIVEPSLSLPQNRISHHPQVGLSTSCVERDDVGKTVSDDQRTFDSLCGGGEHSSPLDEQPDEGEQRGSGDSMAGGGSGAPSEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSNEGHITEIIYKGTHNHPKPSPYRRAATGPSDSHINMQLDISAQGGQQTAEGLLWGDSQKRIPNGAPDWMHENLEVTSSASLGPEYGNQPNTSQAQNGSHVETVEAIDASSTFSNDEDEDDRGTHGSVTLGYEGEGDESESKKRKLDAYVTEMSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVHQISMFVCGIILSPVCDGVYQLLVYRSYYKCTNPGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNSSHISSSTSSPVTTQNSTATTQTHIHRPGPPQPQNTIPRFERPVFSLPGRQQMGSAHGFSFGMNPPGLRNLTMAAVGQAKLPVLPMHPYLAQAHHVNDMGFLLPKGEPNVEPTSDLGLNFSHGSTVYQQIMSRLPLGPEIFTHHIVYLFAEEQPEG 774
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3663619 3668028 + CmoCh06G007190.1 Cmo06g00719 384281

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00719 774 MobiDBLite consensus disorder prediction 606 656 - -
Cmo06g00719 774 Pfam WRKY DNA -binding domain 322 378 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo06g00719 774 Pfam WRKY DNA -binding domain 574 611 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo06g00719 774 SUPERFAMILY WRKY DNA-binding domain 320 380 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo06g00719 774 ProSiteProfiles WRKY domain profile. 316 380 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo06g00719 774 MobiDBLite consensus disorder prediction 58 79 - -
Cmo06g00719 774 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 107 549 IPR044810 GO:0003700
Cmo06g00719 774 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 575 710 IPR044810 GO:0003700
Cmo06g00719 774 ProSiteProfiles WRKY domain profile. 531 614 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo06g00719 774 PANTHER WRKY TRANSCRIPTION FACTOR SUSIBA2-LIKE ISOFORM X1 107 549 - -
Cmo06g00719 774 PANTHER WRKY TRANSCRIPTION FACTOR SUSIBA2-LIKE ISOFORM X1 575 710 - -
Cmo06g00719 774 MobiDBLite consensus disorder prediction 616 648 - -
Cmo06g00719 774 Gene3D WRKY domain 521 615 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo06g00719 774 Gene3D WRKY domain 315 381 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo06g00719 774 MobiDBLite consensus disorder prediction 471 504 - -
Cmo06g00719 774 SMART WRKY_cls 321 379 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo06g00719 774 SMART WRKY_cls 536 613 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo06g00719 774 MobiDBLite consensus disorder prediction 275 327 - -
Cmo06g00719 774 SUPERFAMILY WRKY DNA-binding domain 528 614 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00719 K18835 WRKY2; WRKY transcription factor 2 - csv:101207853 1170.61
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g00719 Cmo16g00982 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00719 Cmo-Chr6:3663619 Cmo10g00863 Cmo-Chr10:4088255 6.02E-99 dispersed
Cmo16g01037 Cmo-Chr16:7226008 Cmo06g00719 Cmo-Chr6:3663619 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g612 . . . . Bpe09g00135 . Bma10g00588 Bma13g01107 Cmo16g00982 Cmo06g00719 . . . . . . . . . . . . . . Cla10g00433 Cam10g0431 Cec10g0454 Cco10g0443 Clacu10g0439 Cmu10g1270 Cre10g0687 Cone6ag0027 Cone9ag0026 Cone14ag1206 . . Csa03g00441 . Cme06g02787 Blo07g00873 Blo10g00861 . Bda12g00951 . Bpe03g00760 . . . . . . Cma16g00943 . Car16g00907 Cpe14g00818 . Bhi11g00499 . . . . . . . . . . . . . Lsi05g00524 . Chy06g01876 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004749 1 2 1 2 2 1 1 1 1 1 3 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 3 3 1 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9956 PF03106 WRKY 6.00E-25 CL0274 Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g00719 Cmo_Chr06 FPKM 0.0 0.0 0.0 0.0 0.820475 0.685004 0.820688 0.0 0.0 0.0