Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00724 ATGGCGATGCCTTCTCGGGAAGCAATTGATACTTTCATCGGCGTCACCGGAGCCTCCGAAGCGATCGCCGTTCAAAAGCTCGAGGCACATGGTGATGATCTCAATGCTGCTGTGAATGCATATTTCAATGAAGGAGATAGAAGTTCGTCCGTAAACGCACATCCGACCTCTGTTTCTGGTGATTATGATTTCATGGACATTGATGATCCAGTTGAAGTTGAACCCCAGGGTCCTCCTCAGTCTCTTCTATCTGCTGCTAGAGAGATTATGAATCCATTTTCATTACTTGATCAAAATCTCCGCCAGGGTTTATTTGACCACGCCTCTGATTTTACTAGTTCTGCTCCAATGGTGACTCATCCAAGAGAGGTGAGGGAGATTCCCATAGAATTTAGAGATGGTAGCCGACCATCTGGCCAATCTGGCCAATCTGGCCATGTGCTGACAATTGAGGATGTCACTGGGACTGTGGATGCCCATGGTCAAGAGGTTCGTGGGACTGTAGTAATTGATGATAACGAAGATGAAGAACCTCTAGTTGCTTCTGTAGCACATGCACCAGATTTAGAGCATCGGGCTATTTCAAGTCATGATTCTCGTGACAGAAATGCTATATCCGGTGCCTTTGAAAGTGCTGAGTTTCAAGACAGAAATGACATTGAAGAAGAAATGATTCGTGCTGCAATTGAGGCTTCAAAGAAAGATGTTGTGCAGGCTTATCCAAGTGATCCCTTAACTACACAAACTGATTTAAGCAATCTTAGGGCTCGAGAACATCTTTCTCACTTGAGTGATTTAGAATTATCACCTGCAGCTTCATCTATCAAGCCAGAGGAAGATTTCCCTGAGCGAGGGGAGAACATTGGAGGATCAAAAACAGAAACTTCGAAGTTAACTGATGTGGAACTGAGGAAGGTCACATCATTAAATGGAAGGATGGAAACAGGAAGTACGTCTGCTCAAGATGAGGTTGAAGATCTAGAGGAAGTTAATTTAATTAGGCATCGGACCAAACGCAAGTCCTCTGGCAATGCTGAGCCTGCAAAGGGGGTTGAAATTGTTGATTTAAGCCTTGCATCAAGTCCCAAGCATCCTGATAGTAGTAATAATCCACAGCACAATGGGAATGCATTTCAGTCTGATGAGTGGGGTGGAATTTCTTCAGAGGAGCATGATGAAGCAGTCATGCTTGAGGCTGCCATGTTTGGTGGAGGTTCTGAAGGAAGTTCATATCGTTTTCCATCTGCACCTCATGAATTCATGAGAAATCAAGGTTCATATGTACAGCCAGCCCCTCGCCCTCCTTCACCCTCCTTAGTAGCTCAGCGCTTGATAAGGGAACAGCAGGATGATGAGTATCTGGCAGCTTTAGAAGCTGACAGAGAAAAAGAACTGAAGGCCATGGCTGAAGCTGCAGCTGTTCGTGAAAAAGAAAGACAGAGAGAGGAAGAATCTCGTCAGAAACTGGATGCTGAGAAGGAACTTGAAAGACATTTGGCAGAAATAGAGGCTTCTCTTCCCAGTGAACCAAGATCAGATGACGAGAATGCGGTGACACTGTTAGTGCGCATGCCAGATGGCAGTCGCCGCGGTCGTCGATTTCTCAAATCTGATAAGCTACAGTGTCTCTTTGACTTCATTGATATCGGTAGAGTTGTCAAGCCTGGTTCCTACAGATTGGTGAGGCCATATCCTCGAAAAGCTTTTGGAGATGGGGAGAGTTCCTTAACATTGAATGAACTTGGAGTTAACAGCAAGCAAGAAGCTTTTTATCTGGAGTTGATTTAA 1788 44.91 MAMPSREAIDTFIGVTGASEAIAVQKLEAHGDDLNAAVNAYFNEGDRSSSVNAHPTSVSGDYDFMDIDDPVEVEPQGPPQSLLSAAREIMNPFSLLDQNLRQGLFDHASDFTSSAPMVTHPREVREIPIEFRDGSRPSGQSGQSGHVLTIEDVTGTVDAHGQEVRGTVVIDDNEDEEPLVASVAHAPDLEHRAISSHDSRDRNAISGAFESAEFQDRNDIEEEMIRAAIEASKKDVVQAYPSDPLTTQTDLSNLRAREHLSHLSDLELSPAASSIKPEEDFPERGENIGGSKTETSKLTDVELRKVTSLNGRMETGSTSAQDEVEDLEEVNLIRHRTKRKSSGNAEPAKGVEIVDLSLASSPKHPDSSNNPQHNGNAFQSDEWGGISSEEHDEAVMLEAAMFGGGSEGSSYRFPSAPHEFMRNQGSYVQPAPRPPSPSLVAQRLIREQQDDEYLAALEADREKELKAMAEAAAVREKERQREEESRQKLDAEKELERHLAEIEASLPSEPRSDDENAVTLLVRMPDGSRRGRRFLKSDKLQCLFDFIDIGRVVKPGSYRLVRPYPRKAFGDGESSLTLNELGVNSKQEAFYLELI 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3705325 3710757 + CmoCh06G007240.1 Cmo06g00724 384286

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00724 595 MobiDBLite consensus disorder prediction 359 391 - -
Cmo06g00724 595 SUPERFAMILY Ubiquitin-like 476 585 IPR029071 -
Cmo06g00724 595 MobiDBLite consensus disorder prediction 267 294 - -
Cmo06g00724 595 MobiDBLite consensus disorder prediction 474 493 - -
Cmo06g00724 595 Pfam UBA-like domain 6 47 - -
Cmo06g00724 595 PANTHER FAS-ASSOCIATED PROTEIN 1 595 - -
Cmo06g00724 595 CDD UBX 519 582 - -
Cmo06g00724 595 ProSiteProfiles UBX domain profile. 513 591 IPR001012 GO:0005515
Cmo06g00724 595 SUPERFAMILY UBA-like 5 44 IPR009060 GO:0005515
Cmo06g00724 595 MobiDBLite consensus disorder prediction 361 383 - -
Cmo06g00724 595 Gene3D - 514 594 - -
Cmo06g00724 595 PANTHER OS09G0525600 PROTEIN 1 595 - -
Cmo06g00724 595 CDD UBA_Ubx1_like 6 42 - -
Cmo06g00724 595 Coils Coil 474 501 - -
Cmo06g00724 595 Pfam UBX domain 513 587 IPR001012 GO:0005515
Cmo06g00724 595 SMART ubx_3 510 594 IPR001012 GO:0005515
Cmo06g00724 595 Gene3D - 5 45 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00724 - - - cmos:111449021 1111.29
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g00724 Cmo16g01046 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00724 Cmo-Chr6:3705325 Cmo06g01132 Cmo-Chr6:8696717 6.00E-13 dispersed
Cmo16g01046 Cmo-Chr16:7318961 Cmo06g00724 Cmo-Chr6:3705325 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g369 . . . . . . . . Cmo06g00724 Cmo16g01046 . . . . . . . . . . . . . . Cla10g00353 . . . . . . . . . . . . . . . . . . . . . . . . . . Cma16g01003 Car06g00629 . Cpe08g00807 . . . . . . . . . . . . . . . . . Chy06g01938 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004108 2 1 2 2 2 1 2 1 1 1 3 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 3 2 2 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g00724 Cmo_Chr06 FPKM 0.858586 1.752851 2.204283 1.605883 2.435865 1.809268 1.923917 2.15713 2.328225 2.429674