Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00728 ATGGCCTCTACCTCCTCCAACAAGCATCATCACTACAAGGGAATCCGCTGCCGGAGCGGGAAATGGGTGTCGGAGATTCGAGAGCCCCGTAAGACGACTCGAATATGGCTCGGTACTTACCCTACTCCGGAGATGGCTGCTGCTGCCTACGACGTGGCTGTGCTTGCTCTAAAGGGTTGCAAAGCTGTTCTCAACTTCCCCGACTCCATTGGGTCGTACCCGGTTCCGGTTTCCATGTCCCCGGCTGATATTCGTGTCGCTGCTGCTACTGCTGCCGCTGCATCTAAAAGAATTGACCATGGAGAAGGAAGTTACAATAATCACCACCCATCTCCACCAACTGACGAGTTCGTCGACGAAGAGGCGCTTTTTGGAATGCCGAATCTACTCGTTGACATGGCGGAGGGAATGCTGTTGTCGCCGCCACGAATTAGCTCATCGCCGTCTCGACATGAGTATTACTCGTGGAACTCGAGTGGAGATGGGAATCTATGGAGCTACTATTAG 507 53.25 MASTSSNKHHHYKGIRCRSGKWVSEIREPRKTTRIWLGTYPTPEMAAAAYDVAVLALKGCKAVLNFPDSIGSYPVPVSMSPADIRVAAATAAAASKRIDHGEGSYNNHHPSPPTDEFVDEEALFGMPNLLVDMAEGMLLSPPRISSSPSRHEYYSWNSSGDGNLWSYY 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3732966 3733472 + CmoCh06G007280.1 Cmo06g00728 384290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00728 168 ProSiteProfiles AP2/ERF domain profile. 11 67 IPR001471 GO:0003700|GO:0006355
Cmo06g00728 168 CDD AP2 11 69 IPR001471 GO:0003700|GO:0006355
Cmo06g00728 168 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 167 - -
Cmo06g00728 168 SMART rav1_2 11 75 IPR001471 GO:0003700|GO:0006355
Cmo06g00728 168 Pfam AP2 domain 11 59 IPR001471 GO:0003700|GO:0006355
Cmo06g00728 168 Gene3D AP2/ERF domain 10 68 IPR036955 GO:0003700|GO:0006355
Cmo06g00728 168 SUPERFAMILY DNA-binding domain 11 69 IPR016177 GO:0003677
Cmo06g00728 168 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF026 5 167 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00728 Cmo-Chr6:3732966 Cmo16g01051 Cmo-Chr16:7356312 4.40E-82 dispersed
Cmo06g00728 Cmo-Chr6:3732966 Cmo02g01523 Cmo-Chr2:8862933 7.95E-62 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9958 PF00847 AP2 5.00E-10 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00728 - - csv:101202953 272.322