Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00749 ATGGCTGGTCGGATTTTTGAAACTTTGTCATTTGGGTCACAACATGGTCAAAGTAATCAATCTTTGCCATTTTCATCTGGAAATGCATCACTGAAGTTCTTGCTCTTGCATGGTTATTTGGATATTTCTGTCAAGTCAGCCAAGAATCTTCCTAACATGGATATGTTTCATAAGACTCTTGGGGATGTTCTTTCAAAAGTGTCTTTTAAGAGTTCTAAGAACAGTGATGGGCAAAAGGCTCCAAAAGTGACTAGTGATCCTTATGTGACTATCTCTGTATCTGGTGCTGTGATAGGAAGAACTTTTGTGATTGATAATAGTGAGAATCCTGTTTGGATGCAGCATTTTAATGTTCCTGTAGCTCATTATGGTGCTGAAGTGCACTTTGTTGTTAAAGATCATGATGTTGTGGGATCACAAATTATAGGTGTTGTTGCTATTCCTATTGAACAATTATACTCTGGAGATGTAGTTGAGGGTACCTACCCAATCCTTAATAGTAGCAGGAAGCCCTGCAAGCCTGGGGCTGTCTTGAGTTTGTCGATTCGGTATATTCCAGCGGACCGAGCGGCCATTTTTCATGGTGGAATGTATGCATCTTCTGATCATCAGGGAGTTCCAGGCACATATTTTCCTCTTAGGAAGGGAGGTAAAGTTACATTGTACCAAGATGCTCATGTTGAGGATGGATGTCTTCCTTCAGATTTTAAGCTTCATGGTGGGGTTGAATATGAACATAGGAGCTGTTGGGACGACATCACTGAATCGATTAGCCAAGCTCGTCGTTTGATCTATATTACGGGCTGGTCTGTGTACCATAATGTTAGATTGGTTAGGGATGGAAAGGCGAAAGAATGCAGTTTAGGGGACTTACTCAAAGCTAAGTCTCAAGAAGGTGTACGAGTGTTGCTTCTTATATGGGATGATCCAACTTCGACAAGTATGTTGGGATATAAAACGGTTGGGATGATGAATACAAATGATGAGGAGACTCGGCGGTTCTTTAAGAACTCTTCAGTCCAAGTGGTATTGTGCCCACGATCTGGTGGAAAAGGTCATAGCTGGATTAAAAAGCAGGAAGCTGGAACCATCTATACCCACCATCAAAAGACAGTGATTGTAGATGCTGATGCTGGCCACCACAAAAGAAAAATTGTAGCTTTTGTTGGAGGTCTCGATTTATGTTTGGGTCGATATGATACTTCGAGGCATCCTCTTTTTCGGACATTGCAAACTACGCACGTAGATGACTTCCACAACCCCAATTTTACGGGACCAGCTACTGGTTGTCCAAGAGAACCATGGCATGATTTGCACTCTAAGATTGATGGTCCAGCAGCATATGACGTCCTAACGAATTTCGAGGAGCGTTGGTTGAGAGCTTCAGAGCCTCGTGGCCTTAAAAAGCTAAAAAGGTTGAATGAAGATGTGTTGCTCAAAATTGAAAGAATTCCTGAAATTTTGGGAATTGCTGATGCTGCTCGTTTGTGTAACAATGATCCAGAAGGTTGGAACGTCCAGATTTTTCGTTCGATCGACTCGAATTCGGTGAAAGGATTTCCTGAGGACCCGAAAGATGCTATAAGTAGGAACTTGGTATGTGGGAAGAATGTGATGATAGATACGAGTATACATTCAGCATATGTTAATGCAATTCGTGCTGCCCAACGCTTCATTTATATTGAAAATCAATACTTCCTTGGGTCATCTTATAATTGGAGCGCTCACAAAGACTTGGGGGCTAATAACTTAATACCGATTGAAATTGCCCTTAAAATTGTGGAGAAAATCAAAGCTAAAGAAAGGTTTTCAGCATATGTGGTTATCCCAATGTGGCCAGAAGGTGTTCCTACAAGCACTCCGATTCAAAGAATTCTTTTTTGGCAGAGTAGGACAATGCAAATGATGTACGAAATGATATATACAGCTTTAGTGGAGGTTGGACTTCATGAACAGTATAAGCCTGAAGACTACTTGAATTTCTTTTGCCTTGGAAACCGTGAGGTGATCAGTGATAGAGATGGCATTGAAGCCGGAAATGGAGAAAAGAATGCTCAATCACTTGTTCGTAAGAGTCGACGTTTTATGATCTATGTTCATTCTAAAGGGATGATAGTAGATGATGAGTATGTCATATTGGGATCCGCAAATATCAATCAGCGATCCCTTGAAGGTACTAGAGACACTGAAATAGCAATGGGCGCGTACCAATCTCGTCATTCTTGGTCGTCAAGCAGACGCTCGAGCCCACGTGGTCAGGTCTATGGATATAGAATGTCATTATGGGCAGAGCACACTGGGACCATGGAGGAATGTTTCGAGAGACCAGAGAGTATTGAATGTGTAAGACGAATCAGATCATTGGGTGAGAGAAACTGGAGACAATATGTTGCTGAGGAAGTGACAGAAATGAGAAGCCATCTTCTTAAATATCCATTGCAAGTTGAGCGAACTGGTAAGGTTACTCATCTTCCTGGTTCTGAGACCTTCCCAGACCTTGGTGGTAACATATTGGGAACATTCATAGCCATCCAAGAGAACCTTACAATTTGA 2553 41.75 MAGRIFETLSFGSQHGQSNQSLPFSSGNASLKFLLLHGYLDISVKSAKNLPNMDMFHKTLGDVLSKVSFKSSKNSDGQKAPKVTSDPYVTISVSGAVIGRTFVIDNSENPVWMQHFNVPVAHYGAEVHFVVKDHDVVGSQIIGVVAIPIEQLYSGDVVEGTYPILNSSRKPCKPGAVLSLSIRYIPADRAAIFHGGMYASSDHQGVPGTYFPLRKGGKVTLYQDAHVEDGCLPSDFKLHGGVEYEHRSCWDDITESISQARRLIYITGWSVYHNVRLVRDGKAKECSLGDLLKAKSQEGVRVLLLIWDDPTSTSMLGYKTVGMMNTNDEETRRFFKNSSVQVVLCPRSGGKGHSWIKKQEAGTIYTHHQKTVIVDADAGHHKRKIVAFVGGLDLCLGRYDTSRHPLFRTLQTTHVDDFHNPNFTGPATGCPREPWHDLHSKIDGPAAYDVLTNFEERWLRASEPRGLKKLKRLNEDVLLKIERIPEILGIADAARLCNNDPEGWNVQIFRSIDSNSVKGFPEDPKDAISRNLVCGKNVMIDTSIHSAYVNAIRAAQRFIYIENQYFLGSSYNWSAHKDLGANNLIPIEIALKIVEKIKAKERFSAYVVIPMWPEGVPTSTPIQRILFWQSRTMQMMYEMIYTALVEVGLHEQYKPEDYLNFFCLGNREVISDRDGIEAGNGEKNAQSLVRKSRRFMIYVHSKGMIVDDEYVILGSANINQRSLEGTRDTEIAMGAYQSRHSWSSSRRSSPRGQVYGYRMSLWAEHTGTMEECFERPESIECVRRIRSLGERNWRQYVAEEVTEMRSHLLKYPLQVERTGKVTHLPGSETFPDLGGNILGTFIAIQENLTI 850
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3897532 3904640 - CmoCh06G007490.1 Cmo06g00749 384311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00749 850 PIRSF PLD_plant 25 850 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Cmo06g00749 850 SMART C2_3c 39 161 IPR000008 -
Cmo06g00749 850 SUPERFAMILY Phospholipase D/nuclease 544 782 - -
Cmo06g00749 850 Gene3D Endonuclease Chain A 510 750 - -
Cmo06g00749 850 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 363 398 IPR001736 GO:0003824
Cmo06g00749 850 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 36 186 IPR035892 -
Cmo06g00749 850 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 695 722 IPR001736 GO:0003824
Cmo06g00749 850 PANTHER PHOSPHOLIPASE D BETA 1-LIKE 10 850 - -
Cmo06g00749 850 Pfam C2 domain 38 164 IPR000008 -
Cmo06g00749 850 Gene3D Endonuclease Chain A 238 477 - -
Cmo06g00749 850 Gene3D C2 domain 25 184 IPR035892 -
Cmo06g00749 850 SUPERFAMILY Phospholipase D/nuclease 204 463 - -
Cmo06g00749 850 SMART pld_4 695 722 IPR001736 GO:0003824
Cmo06g00749 850 SMART pld_4 363 398 IPR001736 GO:0003824
Cmo06g00749 850 ProSiteProfiles C2 domain profile. 14 162 IPR000008 -
Cmo06g00749 850 Pfam Phospholipase D C terminal 770 840 IPR024632 -
Cmo06g00749 850 Pfam Phospholipase D Active site motif 696 722 IPR001736 GO:0003824
Cmo06g00749 850 Pfam Phospholipase D Active site motif 364 398 IPR001736 GO:0003824
Cmo06g00749 850 CDD C2_plant_PLD 34 185 - -
Cmo06g00749 850 PANTHER PHOSPHOLIPASE D 10 850 IPR015679 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00749 Cmo-Chr6:3897532 Cmo17g00004 Cmo-Chr17:29457 0 dispersed
Cmo06g00749 Cmo-Chr6:3897532 Cmo08g00909 Cmo-Chr8:5910019 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00749 K01115 - csv:101208016 1581.62