Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00753 ATGACTTCCTACTTCCCTCGTCCGAGCTTTGTCGCCATCATCGTCGTTTTCGTTTTGCCGCTTATGATGCCCGGGATCACAACTAGACCGGTGCTCGCCATCTTTCGACCGAGCCCTTGGAAGATTGCTCATGCCACCTTTTATGGTGACGAGACAGCATCTGAAACAATGGGAGGAGCTTGTGGATATGGAAACCTCTTCACGAACGGCTATGGCATCGACACGGTGGCTTTAAGCTCAACGCTTTTCAACAATGGCTACGCTTGTGGAACTTGCTTTCAAATCAAATGCATGCAATCCAAAGCTTGTTACGCTAACGTTGCGTTCACAACGGTGACGGCCACCAATCTCTGTCCCCCTAATTGGTCTAAACCCTCTGACAACGGTGGCTGGTGCAACCCTCCGAGGGTTCATTTTGACATGTCGAAACCTGCCTTTATGAAGATCGCCAACTGGAAGGCTGGGATCATCCCCGTTGCGTACCGTCGCGTTCCATGCATAAAAAAAGATGGCATTCGATTCACACTCCAAGGAAATGGGTACTGGCTTTTGGCGTACGTGATGAATGTCGGGGGCGGAGGGGACGTGTCCGGGATGTGGGTGAAAGGAAGCAAGACAGGGTGGATTAGAATGAGCCATAATTGGGGAGCTTCCTATCAAGCATTTTCCACGTTGGTTGGACAATCCCTGTCTTTTATAGTCACCTCGTACACCACCAAAGAGACCATCACGGCTTGGAATGTTGCTCCTTCTAATTGGAAGTTTGGCGCGACCTACAAAGCTAACGTCAACTTCCGTTGA 801 50.06 MTSYFPRPSFVAIIVVFVLPLMMPGITTRPVLAIFRPSPWKIAHATFYGDETASETMGGACGYGNLFTNGYGIDTVALSSTLFNNGYACGTCFQIKCMQSKACYANVAFTTVTATNLCPPNWSKPSDNGGWCNPPRVHFDMSKPAFMKIANWKAGIIPVAYRRVPCIKKDGIRFTLQGNGYWLLAYVMNVGGGGDVSGMWVKGSKTGWIRMSHNWGASYQAFSTLVGQSLSFIVTSYTTKETITAWNVAPSNWKFGATYKANVNFR 266
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3913410 3914294 + CmoCh06G007530.1 Cmo06g00753 384315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00753 266 Pfam Expansin C-terminal domain 172 250 IPR007117 -
Cmo06g00753 266 Gene3D - 26 166 IPR036908 -
Cmo06g00753 266 SUPERFAMILY PHL pollen allergen 169 260 IPR036749 -
Cmo06g00753 266 SMART dpbb_1 75 161 IPR007112 -
Cmo06g00753 266 PRINTS Expansin signature 70 84 IPR002963 GO:0009664
Cmo06g00753 266 PRINTS Expansin signature 110 120 IPR002963 GO:0009664
Cmo06g00753 266 PRINTS Expansin signature 129 146 IPR002963 GO:0009664
Cmo06g00753 266 PRINTS Expansin signature 146 159 IPR002963 GO:0009664
Cmo06g00753 266 PRINTS Expansin signature 170 182 IPR002963 GO:0009664
Cmo06g00753 266 PRINTS Expansin signature 182 203 IPR002963 GO:0009664
Cmo06g00753 266 PRINTS Expansin signature 247 263 IPR002963 GO:0009664
Cmo06g00753 266 SUPERFAMILY Barwin-like endoglucanases 39 189 IPR036908 -
Cmo06g00753 266 PRINTS Expansin/Lol pI family signature 39 54 IPR007118 GO:0005576
Cmo06g00753 266 PRINTS Expansin/Lol pI family signature 57 75 IPR007118 GO:0005576
Cmo06g00753 266 PRINTS Expansin/Lol pI family signature 79 97 IPR007118 GO:0005576
Cmo06g00753 266 PRINTS Expansin/Lol pI family signature 154 170 IPR007118 GO:0005576
Cmo06g00753 266 PRINTS Expansin/Lol pI family signature 208 222 IPR007118 GO:0005576
Cmo06g00753 266 PRINTS Expansin/Lol pI family signature 247 261 IPR007118 GO:0005576
Cmo06g00753 266 PANTHER EXPANSIN-A15 15 266 IPR002963 GO:0009664
Cmo06g00753 266 PANTHER EXPANSIN-A7 15 266 - -
Cmo06g00753 266 Gene3D - 171 266 IPR036749 -
Cmo06g00753 266 Pfam Lytic transglycolase 75 161 IPR009009 -
Cmo06g00753 266 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 58 171 IPR007112 -
Cmo06g00753 266 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 181 261 IPR007117 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g00753 Cmo15g01247 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00753 Cmo-Chr6:3913410 Cmo02g00797 Cmo-Chr2:4921039 2.09E-94 dispersed
Cmo15g01247 Cmo-Chr15:8565520 Cmo06g00753 Cmo-Chr6:3913410 3.44E-152 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00753 - - csv:101207770 498.049