Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00757 ATGGAGGTCGGGCCCAAGATTAGTGGTGAAGATGTTATCGAAAAGCTCAAGGATGATGGCGACTTCGATAAGCTCCGTCTCAAGATCATTCGCAAGCTGAAAGACAATGAAGAATTGCGCAATAATATAGTTGCAATAGTGAAGCAATCGGCAGCTCTTAATCGAGCAGGGGCTGAAAATGTAAAACCTCGGCAACTTTCTGATGCAATATTTGACGAGGTTGGGGATGAAATAATGAGCAAGGTTTCTGATAACTTATGGGAGATAATCAGATCAGATGATGGCATGAAAAATGAAATCACAGAAACTGTACAATCAATATACGATAACTTAGCGAACCCGAAAGCGAAGGAAGACGCCGAAGCATCCACCCACCATGCTATACCAGTTTGGAAGGAAGCTGACAACAATGGTTCTATGAAGGCCTCCACCAGTCAATCTGAACACACTGAGTCCAATCCTATAGAACCTTCAGGTTATTCTTTTGCTGGTAATCATACAAACAAGGAAAAACAACACGTAGATGAGCTGCAGTTTATTAAACGTGACAACGATAGTCGAAACGACATGTCTGATGCAGATAATGTCGATCCAGCACCAGGCTTTGTTTCAAACACGAAGCACAACCAAATGTGTATAGATGATGACAGCGATGAAGACCCAGATGTGCCCCCTGGTTTCGCTAATTTTACTGTTTTCTATCGTGTATCAGTTCTAATGCCCCTTAATTGCTTTCGATTGATGCAGAGCACCGTTGATTTGCCCGAACTTTTGTTTTCTAATGAGGATCTTTGTTGGTTAAATTGCTCAAGGGGTTGTTGTTTTGTTATGACAGAGTTTATGGTGGATATGAAATGTGAGGGCTGCGTTAATGCCGTCAAGAACAAGTTACAGGGCGTTGATGGCGTGAAGAGTGTTGATGTGGACTTGAGCAATCAAGTGGTTAGGATACTGGGTACAACACCTGTGAAGACAATGACTGAAGCTTTGGAGCAGACGGGTCGAAAAACCCGGTTAATTGGGCAAGGGGTTCCTGAGGATTTCTTAGTTTCTGCTGCTGTCTCCGAATTTAAAGGCCCGAATATATTTGGCGTGGTTCGATTGGCTCAAGTAAGTATGGAACTAGCCAGGGTTGAAGCCAATTTTAGTGGATTGTCACCTGGAAAACATGGTTGGTCAATCAATGAATTTGGTGACCTGACTAGAGGTGCTGCTAGCACAGGGAAAGTGTTTGATTCTGCAGATTCTGGCCCTAGTAATGAGCCATTGGGCGACCTGGGAACATTAGAGGCCGATGAAAATGGCGAAGCGTTTTTCTCTGGTGTGAAACAGAACCTGCGTGTGTGTGATCTCATCGGACGATCGATAGCGGTGTATGAGACCGAAGATAAATCAGTTCCGGGCATCGCAGCAGCAGTAGTAGCTCGAAGCGCGGGTGTCGGAGAGAACTACAAGAAGCTATGCACCTGTGATGGGACTACCATATGGGAATCAAGTGACAGGGATTTTGTCACCAGCAAAGTCTAA 1527 44.47 MEVGPKISGEDVIEKLKDDGDFDKLRLKIIRKLKDNEELRNNIVAIVKQSAALNRAGAENVKPRQLSDAIFDEVGDEIMSKVSDNLWEIIRSDDGMKNEITETVQSIYDNLANPKAKEDAEASTHHAIPVWKEADNNGSMKASTSQSEHTESNPIEPSGYSFAGNHTNKEKQHVDELQFIKRDNDSRNDMSDADNVDPAPGFVSNTKHNQMCIDDDSDEDPDVPPGFANFTVFYRVSVLMPLNCFRLMQSTVDLPELLFSNEDLCWLNCSRGCCFVMTEFMVDMKCEGCVNAVKNKLQGVDGVKSVDVDLSNQVVRILGTTPVKTMTEALEQTGRKTRLIGQGVPEDFLVSAAVSEFKGPNIFGVVRLAQVSMELARVEANFSGLSPGKHGWSINEFGDLTRGAASTGKVFDSADSGPSNEPLGDLGTLEADENGEAFFSGVKQNLRVCDLIGRSIAVYETEDKSVPGIAAAVVARSAGVGENYKKLCTCDGTTIWESSDRDFVTSKV 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3930697 3937632 + CmoCh06G007570.1 Cmo06g00757 384319

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00757 508 ProSiteProfiles Heavy-metal-associated domain profile. 276 339 IPR006121 GO:0046872
Cmo06g00757 508 Gene3D Superoxide dismutase, copper/zinc binding domain 346 476 IPR036423 GO:0006801|GO:0046872
Cmo06g00757 508 MobiDBLite consensus disorder prediction 137 166 - -
Cmo06g00757 508 PANTHER SUPEROXIDE DISMUTASE CU-ZN -RELATED 251 508 IPR024134 -
Cmo06g00757 508 Coils Coil 22 56 - -
Cmo06g00757 508 MobiDBLite consensus disorder prediction 185 220 - -
Cmo06g00757 508 Pfam Copper/zinc superoxide dismutase (SODC) 364 465 IPR001424 GO:0006801|GO:0046872
Cmo06g00757 508 PANTHER COPPER CHAPERONE FOR SUPEROXIDE DISMUTASE, CHLOROPLASTIC/CYTOSOLIC 251 508 - -
Cmo06g00757 508 CDD HMA 279 338 IPR006121 GO:0046872
Cmo06g00757 508 SUPERFAMILY HMA, heavy metal-associated domain 277 339 IPR036163 GO:0046872
Cmo06g00757 508 SUPERFAMILY Cu,Zn superoxide dismutase-like 341 500 IPR036423 GO:0006801|GO:0046872
Cmo06g00757 508 MobiDBLite consensus disorder prediction 118 166 - -
Cmo06g00757 508 Gene3D - 276 339 - -
Cmo06g00757 508 Pfam Heavy-metal-associated domain 280 336 IPR006121 GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00757 K04569 CCS; copper chaperone for superoxide dismutase - csv:101206552 423.705
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00757 Cmo-Chr6:3930697 Cmo12g01041 Cmo-Chr12:9682720 1.93E-21 dispersed
Cmo06g00757 Cmo-Chr6:3930697 Cmo14g01638 Cmo-Chr14:12996410 3.25E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g433 Blo02g01077 . . . Bpe05g00616 . . . Cmo06g00757 . . . . . Sed03g1293 . . Bhi11g00230 Tan01g1957 Cmetu06g0126 . Hepe06g1192 Mch10g1486 . Cla10g00319 Cam10g0334 Cec10g0348 Cco10g0340 Clacu10g0331 Cmu10g1171 Cre10g0581 . . Cone6ag0732 Cone9ag0736 Lsi07g01368 . . Cme06g02653 . . . . . . Bma05g00795 . . . . Cma06g00733 . Car06g00653 . Cpe08g00785 . . . . . . . . . . . . . . . . . Chy06g01983 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009814 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g00757 Cmo_Chr06 FPKM 32.357143 35.228371 31.486753 25.63702 59.617538 67.348953 50.820919 29.823137 27.623404 30.825239