Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00760 ATGAGAAGGGTTCCTCGGCTTTGTTTTTCTTCTCATGCTCTTCTGTTCTTGATTACATTTCTCGTCGGAATTTGTTCCGCCATCACTGAGAAGGACATTTTGCTTCAATTCAAAGATGCTGTTACAGAGGATCCGTTTGATTTCTTGAAAACTTGGGTCGCCGGCGAGGATCATTGCCTAAACTTCAGCGGCGTGTTGTGTAATCCCGATGGTTTTGTGGAGAAGATTGTGCTATGGAACTCCAGCTTGGCTGGAACTTTATCGCCTGCCTTGTCCGGATTGAAGTTCTTGAGGACTTTGACATTGTATGGAAATAGATTCACTGGCAATATTCCAATTGAATATGGCAACATTGTTACTCTGTGGAAGCTGAACTTGAGCTCGAATGCTTTGTCGGGTTCGGTCCCGGAGTTCATTGGCAATTTGCCAAACATTCGGTTTCTAGATTTGTCTAGAAATGGCTTTACAGGGAAGATTCCTTCAGCTGTGTTCAAGAATTGTCTCAAAACTAGATTTGTTTCGTTTTCTCATAACAGATTTTCAGGTATGATTCCTTCAACAATTATGAACTGTTTGAACCTTGAAGGCTTTGATTTCTCAAACAATGATCTTAGTGGGAGTATTCCTTTGCGACTTTGTAACATTCAAAGATTAGAATATGTTTCTGTGAGAAGCAATTCACTTACTGGGAGTGTTCAAGGGCAGTTCTCTGCTTGCCAGAGCTTGAAACTTCTGGATCTTAGTAGCAATTCGTTCACTGGGTCGCCACCGATCGAGGTTCTCGGATTCAAAAACATCACTTATTTTAATGTCTCATATAACATGTTTAGTGGGGGAATTGCAGAGGTTGTAGGTTGTAGTGATAATCTGGAAGTTCTTGATGTTTCATGGAATGAATTAGATGGGGAGATCCCATTGAGCATTACAAAGTGTAGGAGCCTTAAAATCTTGGATTTGGAATCTAACAAGCTGGTTGGGAGGATCCCTGCTGAACTTGCAGCTTTGAACAAGCTTTTGGTTGTTCGGTTGGGTTATAACTCGATCACCGGGACAGTTCCAGCCATTTTCGGGAACATCGAGCTGCTTCAGGTTTTGAATTTGCACGGTCTTAAACTTGTTGGTGAGATACCTGCTGATATAACCAGTTGCAGGTTTCTTCTTGAGCTGGATATTTCTGGTAATGAATTGGAAGGGGGAATTCCTCAATCTGTTTATAACATGACATACCTTGAAATTCTTGATCTTCGTGATAACCATCTGAACGGACTCATTCCGTCGACGCTCGGGAGCCTCTCGAAACTACAGTTTCTGGATCTATCTCGAAATCTACTGTCTGGTTCGATACCTCCTACTCTTGAAAATCTCACATTGCTGCACCATTTCAATGTCTCGTCCAATAACCTTTCAGGCATTATACCTCCCGCCAAGACGATCCAAGATTTCGGGCCATCTGCATTCTTAAACAATCCTTTTCTTTGTGGTGCTCCCTTGGATCCTTGCTCTGCTAATAACGCCACTGGCACGACTTCCATATCGAAGAAGCCTAAAGTTCTTAGTCTATCTGCAATCATTGCAATTGTAGCAGCAGTTGTGATCCTGGTCGGGGTTTGCGTGATCTCGATTTTGAACCTAATGGCTCGGACAAGGAAGGCAAGGAGCACGGAAATCATTGAGAGCACGCCACTCGGTTCAACCGATTCAGGTATCATAATTGGGAAGCTGGTTCTTTTTAGCAAATCTTTGCCATCAAAGTACGAAGACTGGGAGGCTGGCACCAAAGCGCTGCTCGACAAGGAATGTCTTATAGGGGGTGGCTCTATCGGCACTGTCTACAAGACAAGTTTCGACGTCGGAATCTCCATCGCTGTAAAGAAGCTGGAGACTCTTGGGAGGATCAGAACCCAAGACGAGTTCGAGACAGAAATTGGACGTTTGGGAAACATTAAACACCCGAACTTAGTCGCCTTTCAGGGATACTATTGGTCTTCGTCAATGCAGTTGATTCTATCGGAATTCGTTGTAAATGGCAATCTTTACGACAATTTACACGGTCTGAGTTATCCAGGCACCAGCACAGGCATTGGCAATACAGAGTTACATTGGTCTAGGAGATATCAAATTGCACTTGGAACAGCTAGAGCTCTTGCTTATCTTCACCATGATTGTAAGCCTCCAATTCTTCACCTCAACATAAAATCAACAAACATTCTGTTAGACGAAAACTACGAAGCCAAGTTATCCGATTACGGGTTGGAGAAGTTGCTTCCTGTTATGGACAATTACATCTTAACCAAATACCATACCGCTGTAGGCTACGTTGCACCGGAGTTGGCACAAAGTTTGAGAGTTAGCGAAAAATGCGATGTCTATAGTTTCGGAGTGATTCTACTGGAGTTGGTAACAGGGAGGAAGCCAGTTGAGAGTCCTAGAGCAAACCAGGTAGTGATTTTGTGTGAATATGTAAGGGAGTTGTTGGAAAGTGGTTCGGCTTCTGACTGTTTCGATCGGAACTTACGCGGGATTGCTGAAAGCGAGCTCATTGAAGTGATGAAGTTGGGATTGATCTGTACATCTGAGATCCCTTCAAAGAGACCGAGCATGGCCGAGGTTGTTCAAGTTCTTGAGTCGATAAGAAACGGATTAGGATCATAG 2652 43.48 MRRVPRLCFSSHALLFLITFLVGICSAITEKDILLQFKDAVTEDPFDFLKTWVAGEDHCLNFSGVLCNPDGFVEKIVLWNSSLAGTLSPALSGLKFLRTLTLYGNRFTGNIPIEYGNIVTLWKLNLSSNALSGSVPEFIGNLPNIRFLDLSRNGFTGKIPSAVFKNCLKTRFVSFSHNRFSGMIPSTIMNCLNLEGFDFSNNDLSGSIPLRLCNIQRLEYVSVRSNSLTGSVQGQFSACQSLKLLDLSSNSFTGSPPIEVLGFKNITYFNVSYNMFSGGIAEVVGCSDNLEVLDVSWNELDGEIPLSITKCRSLKILDLESNKLVGRIPAELAALNKLLVVRLGYNSITGTVPAIFGNIELLQVLNLHGLKLVGEIPADITSCRFLLELDISGNELEGGIPQSVYNMTYLEILDLRDNHLNGLIPSTLGSLSKLQFLDLSRNLLSGSIPPTLENLTLLHHFNVSSNNLSGIIPPAKTIQDFGPSAFLNNPFLCGAPLDPCSANNATGTTSISKKPKVLSLSAIIAIVAAVVILVGVCVISILNLMARTRKARSTEIIESTPLGSTDSGIIIGKLVLFSKSLPSKYEDWEAGTKALLDKECLIGGGSIGTVYKTSFDVGISIAVKKLETLGRIRTQDEFETEIGRLGNIKHPNLVAFQGYYWSSSMQLILSEFVVNGNLYDNLHGLSYPGTSTGIGNTELHWSRRYQIALGTARALAYLHHDCKPPILHLNIKSTNILLDENYEAKLSDYGLEKLLPVMDNYILTKYHTAVGYVAPELAQSLRVSEKCDVYSFGVILLELVTGRKPVESPRANQVVILCEYVRELLESGSASDCFDRNLRGIAESELIEVMKLGLICTSEIPSKRPSMAEVVQVLESIRNGLGS 883
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3945531 3948519 + CmoCh06G007600.1 Cmo06g00760 384322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00760 883 SUPERFAMILY L domain-like 262 499 - -
Cmo06g00760 883 Gene3D Ribonuclease Inhibitor 218 504 IPR032675 -
Cmo06g00760 883 Pfam Protein kinase domain 600 872 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g00760 883 Pfam Leucine rich repeat 217 275 IPR001611 GO:0005515
Cmo06g00760 883 Pfam Leucine rich repeat 388 444 IPR001611 GO:0005515
Cmo06g00760 883 SMART LRR_typ_2 431 455 IPR003591 -
Cmo06g00760 883 SMART LRR_typ_2 335 358 IPR003591 -
Cmo06g00760 883 SMART LRR_typ_2 142 166 IPR003591 -
Cmo06g00760 883 SMART LRR_typ_2 407 430 IPR003591 -
Cmo06g00760 883 CDD STKc_IRAK 602 877 - -
Cmo06g00760 883 Gene3D Transferase(Phosphotransferase) domain 1 674 881 - -
Cmo06g00760 883 Pfam Leucine Rich Repeat 289 311 IPR001611 GO:0005515
Cmo06g00760 883 ProSiteProfiles Leucine-rich repeat profile. 433 456 IPR001611 GO:0005515
Cmo06g00760 883 Gene3D Ribonuclease Inhibitor 145 215 IPR032675 -
Cmo06g00760 883 Gene3D Ribonuclease Inhibitor 29 144 IPR032675 -
Cmo06g00760 883 PANTHER UNNAMED PRODUCT 6 880 - -
Cmo06g00760 883 Gene3D Phosphorylase Kinase; domain 1 573 672 - -
Cmo06g00760 883 SUPERFAMILY L domain-like 29 281 - -
Cmo06g00760 883 ProSiteProfiles Protein kinase domain profile. 596 877 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g00760 883 SUPERFAMILY Protein kinase-like (PK-like) 597 875 IPR011009 -
Cmo06g00760 883 PANTHER - 6 880 - -
Cmo06g00760 883 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00760 Cmo-Chr6:3945531 Cmo14g00008 Cmo-Chr14:49629 4.07E-155 dispersed
Cmo06g00760 Cmo-Chr6:3945531 Cmo15g00181 Cmo-Chr15:831929 3.01E-177 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74412 PF00069 Pkinase 5.40E-35 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00760 - - csv:101212415 1540.78