Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00770 ATGGAGGTACGAGAAGGGGAGGGTGGAAATGGGGTTACGGCGGCGGCTGAGTCAGATCCTTCGAGACCCGACACGACGGCTCCGGTACCGGAAGGTGGTGGTCCTGTAGGTTCTGCGGCTGTGGCGGCGAAGAAGAAGAGGGGGAGGCCGAGGAAGTATGGGCCGGATGGAAAGTTGAATGTGGCGGCGCTGTCACGGAAGGCAATATCAGGGTCGGCACTAGCACTGGCAGTGGCACCGGCGGCGGTGATTGATTTCTCGGCTGCGAAACGGGGGAAAGTGCGGCCGGCGAGTTGGTTGAGCAAAACCAAATATGAAGCGGAGAGTTTAGCGGAATGGGTACCTTGCTCCGTTGGTGGTAATTTTACACCTCATATCATCGCTGTCAACTCGGGTGAGGACATAACGATGAAGATTCTCTCATTTTCTCAACAAGGGCCTCGAGCCATATGCATTCTGTCTGCTAATGGTGTGATTTCGAGCGTCACTCTTCGTCAACCGAATTCTTCTGGAGGAACATTAACATATGAGGGTCGGTTCGAGATATTGTCGTTGTCAGGATCGTTCATCCCGAGTGACAATGCAGGAGCTAGGAGTCGAACTGGTGGAATGAGTGTTTCCTTAGCGAGTTCAGACGGACGTGTCTTTGGTGGTGGAGTTGTTGGTTTGTTAGTAGCTGCAAGTTCTATTCAAGTGGTAGTAGGAAGCTTTATATCAGGGAACCAACATGAACAAAAATCGAAGAAACCGAAACAAGACATTGTATTACCGGTTTCAGCTCTTCCGATATCCCCTGTTGAATTGAAGTCATACATGACAACAACGACAACGACAACGACAACAACGCCATCATTCCGTGCTGAGACTTGGTCACCTTTAGGGCTAGATTTGAGAAGTCAGCCAACCGATACGAACGTAAGTTAA 924 50.54 MEVREGEGGNGVTAAAESDPSRPDTTAPVPEGGGPVGSAAVAAKKKRGRPRKYGPDGKLNVAALSRKAISGSALALAVAPAAVIDFSAAKRGKVRPASWLSKTKYEAESLAEWVPCSVGGNFTPHIIAVNSGEDITMKILSFSQQGPRAICILSANGVISSVTLRQPNSSGGTLTYEGRFEILSLSGSFIPSDNAGARSRTGGMSVSLASSDGRVFGGGVVGLLVAASSIQVVVGSFISGNQHEQKSKKPKQDIVLPVSALPISPVELKSYMTTTTTTTTTTPSFRAETWSPLGLDLRSQPTDTNVS 307
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4004220 4007180 + CmoCh06G007700.1 Cmo06g00770 384332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00770 307 MobiDBLite consensus disorder prediction 1 56 - -
Cmo06g00770 307 Gene3D - 124 254 - -
Cmo06g00770 307 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 39 306 - -
Cmo06g00770 307 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 39 306 IPR039605 GO:0003680
Cmo06g00770 307 Pfam Plants and Prokaryotes Conserved (PCC) domain 124 237 IPR005175 -
Cmo06g00770 307 ProSiteProfiles PPC domain profile profile. 119 260 IPR005175 -
Cmo06g00770 307 CDD DUF296 123 214 IPR005175 -
Cmo06g00770 307 SUPERFAMILY AF0104/ALDC/Ptd012-like 121 243 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01551 Cmo-Chr2:8983157 Cmo06g00770 Cmo-Chr6:4004220 3.07E-114 dispersed
Cmo06g00770 Cmo-Chr6:4004220 Cmo14g02040 Cmo-Chr14:14913849 2.53E-76 dispersed
Cmo15g01234 Cmo-Chr15:8497053 Cmo06g00770 Cmo-Chr6:4004220 9.47E-111 wgd
Cmo16g01081 Cmo-Chr16:7648276 Cmo06g00770 Cmo-Chr6:4004220 1.63E-152 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00770 - - cmos:111448214 516.153