Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00771 ATGCCACTGATTACGCCGATGCCTTATCTCGATCTAGGGTTTTGCGATGTTCTACTATGGGCTTTCAGTTTTCGTTGCTTGCGGCTTCCCTTTGAGCGTGGACGTTTTGACATCATGGTTAATGCCATTAAAGGACTATTCATCTCCTGTGACATACCTATGGGACAATTTATCATCAATTACAATGCATCCCTACCTGCATCCCATAGATTTATCATCCATATTTTGGACAATACTCACATGTTTGTGCAACCCAATGTAGCTGATATGATTCGAAACGCCATGTCTGAATTTCGAGATCAGAATTCGTATGAGAAGCCTACTTGA 327 41.59 MPLITPMPYLDLGFCDVLLWAFSFRCLRLPFERGRFDIMVNAIKGLFISCDIPMGQFIINYNASLPASHRFIIHILDNTHMFVQPNVADMIRNAMSEFRDQNSYEKPT 108
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4009536 4011882 + CmoCh06G007710.1 Cmo06g00771 384333

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00771 108 PANTHER GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 5 39 108 - -
Cmo06g00771 108 Pfam Transcription factor TFIIH complex subunit Tfb5 39 106 IPR009400 GO:0000439|GO:0006289|GO:0006367
Cmo06g00771 108 SMART Tbf5_2 39 106 IPR009400 GO:0000439|GO:0006289|GO:0006367
Cmo06g00771 108 SUPERFAMILY TFB5-like 44 107 IPR035935 -
Cmo06g00771 108 Gene3D - 39 106 IPR035935 -
Cmo06g00771 108 PANTHER GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 5 39 108 IPR009400 GO:0000439|GO:0006289|GO:0006367
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00771 K10845 TTDA, GTF2H5, TFB5; TFIIH basal transcription factor complex TTD-A subunit - csv:101204877 134.806
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g470 Blo02g01068 . . Bda08g00553 Bpe05g00606 . . . Cmo06g00771 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma05g00785 . . . . . . Car06g00669 . Cpe08g00772 . . . . . . . . . . . . . . . . Csa03g00327 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014896 1 0 0 1 1 0 1 0 0 0 0 0 1 0 1 1 0 0 1 0 1 0 0 0 1 0 1 2 1 1 15
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g00771 Cmo_Chr06 FPKM 816.24939 836.202637 0.0 0.0 0.0 0.0 0.0 0.0 0.290247 0.0