Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00787 ATGTTGGCTCGCCTCAATATCTCCCCCCACCCCCCACCTCAACCATACGCGATGCAGCACTCCTCCAATTCCCAATCCCAGCCTCTAACTTCCCGCCGCGTCGCAGTCATAGGGGCCGGCGCCGGTGGCCTCGTCAGCGCCCGTGAGCTCGGCCGCGAGGGTCACAGTGTCGTCGTATTCGAACGGAGCAGTCAAATCGGAGGAACCTGGGTTTACTCGCCGGAAATTGAATCCGACCCACTTGGAGTTGACCCAAATCGGACTCGAATCCATAGCAGCCTCTACAAATCTCTACGCACAAATCTCCCCAGAGAACTCATGGGGGTTCGCGATTACCCGTTTGTGCCCCGAGAAGGGGAAGGTCGGGACCCGAGGCGATTTCCGAGTCATCTAGAGGTTTTGAAGTATTTGGAAGATTTCGCGAATGAATTTGGGATTTGTGAATTGGTGAGGTTTGGAACTGAGGTGGTTTCTGCTGGGTTGGTGGAGGTTGGGAAATGGAGGGTTCGATTTAGATGTGAAAGTGGGGATGTTGATGATGAGATGTTTGATGCTGTGGTTGTGTGTGTTGGGAATTATTCACAGCCTCGAGTGGCAGAGATTCCTGGGATTGATGAATGGCCTGGGGAGCAAATTCATAGTCACAATTATCGTGATCCCGAACCATTTCGGGGTAAGGTTGTTATCTTGATAGGTTTCTCTTCAAGTGGCACGGACATATCTCAGGAGCTCCTTGTGGTTGCCAAAGAAGTTCATATTGCATGCAGATCAGCTAAAACAGGGTTTTTGCTTGCAGAATCAGTTATTAGTAAAGTGTCATTCCACCCAATGATCAAAAGTGCCCGTAAAGACGGGACGGTGGTTTTTGAAGACGGGTGCGTCGTCTCGGCTGATGTTATTCTGCACTGCACTGGGTACAAGTATCATTTCCCTTTTCTTGAAACAAATGGCATTGTTACTGTGGACGACAACCGTGTCGGGCCTCTATACAAGCATGTCTTCCCACCAGCCTTGGCCCCGGGACTTTCGTTTGTCGGGTTACCATTTAAGGTTGTTCCTTTGCCCATGTTTGAGCTTCAAAGCAATTGGGTTGCTGGTGTTTTATCAAAAAGGATTGCACTTCCATCGAAAGAGTTGATGTTGGCAGATGTTAAGGCTTTTTATGCAGATCTTGAAGCTAATGGCAAGCCTAAGCATCGGACCCATGAGATGAGTGATTGTATGGTTGAGTACTTTAACTGGCTTGCTGCAACATGTGGCTGTCCAGCCTATGAAGAATGGAGAAAGGGAATGTACGATTACACACACGTTAACAAAAGGGCTAATCTCGGGTCGTACCGTGATGATTGGCATGACGACGAGTTGATTCATCAAGCTTACGAGGAGTTTAGGAAGTATACTACAAATGGAAGAAGTGAAGACCCAGCACATTTGAATGTTTGA 1443 48.51 MLARLNISPHPPPQPYAMQHSSNSQSQPLTSRRVAVIGAGAGGLVSARELGREGHSVVVFERSSQIGGTWVYSPEIESDPLGVDPNRTRIHSSLYKSLRTNLPRELMGVRDYPFVPREGEGRDPRRFPSHLEVLKYLEDFANEFGICELVRFGTEVVSAGLVEVGKWRVRFRCESGDVDDEMFDAVVVCVGNYSQPRVAEIPGIDEWPGEQIHSHNYRDPEPFRGKVVILIGFSSSGTDISQELLVVAKEVHIACRSAKTGFLLAESVISKVSFHPMIKSARKDGTVVFEDGCVVSADVILHCTGYKYHFPFLETNGIVTVDDNRVGPLYKHVFPPALAPGLSFVGLPFKVVPLPMFELQSNWVAGVLSKRIALPSKELMLADVKAFYADLEANGKPKHRTHEMSDCMVEYFNWLAATCGCPAYEEWRKGMYDYTHVNKRANLGSYRDDWHDDELIHQAYEEFRKYTTNGRSEDPAHLNV 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4114586 4118627 - CmoCh06G007870.1 Cmo06g00787 384349

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00787 480 PRINTS Flavin-containing monooxygenase (FMO) signature 32 48 IPR000960 GO:0050660|GO:0050661
Cmo06g00787 480 PRINTS Flavin-containing monooxygenase (FMO) signature 56 80 IPR000960 GO:0050660|GO:0050661
Cmo06g00787 480 PRINTS Flavin-containing monooxygenase (FMO) signature 212 226 IPR000960 GO:0050660|GO:0050661
Cmo06g00787 480 PRINTS Flavin-containing monooxygenase (FMO) signature 239 254 IPR000960 GO:0050660|GO:0050661
Cmo06g00787 480 PRINTS Flavin-containing monooxygenase (FMO) signature 290 317 IPR000960 GO:0050660|GO:0050661
Cmo06g00787 480 PRINTS Flavin-containing monooxygenase (FMO) signature 355 368 IPR000960 GO:0050660|GO:0050661
Cmo06g00787 480 MobiDBLite consensus disorder prediction 1 30 - -
Cmo06g00787 480 Gene3D - 33 450 IPR036188 -
Cmo06g00787 480 PANTHER DIMETHYLANILINE MONOOXYGENASE 27 467 - -
Cmo06g00787 480 Gene3D - 200 303 IPR036188 -
Cmo06g00787 480 SUPERFAMILY FAD/NAD(P)-binding domain 30 257 IPR036188 -
Cmo06g00787 480 Pfam Flavin-binding monooxygenase-like 268 417 IPR020946 GO:0004499|GO:0050660|GO:0050661
Cmo06g00787 480 Pfam Flavin-binding monooxygenase-like 32 257 IPR020946 GO:0004499|GO:0050660|GO:0050661
Cmo06g00787 480 PANTHER FLAVIN-CONTAINING MONOOXYGENASE 27 467 - -
Cmo06g00787 480 SUPERFAMILY FAD/NAD(P)-binding domain 278 454 IPR036188 -
Cmo06g00787 480 PIRSF FMO 262 425 IPR000960 GO:0050660|GO:0050661
Cmo06g00787 480 PIRSF FMO 30 266 IPR000960 GO:0050660|GO:0050661
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00787 - - - cmos:111447804 981.474
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00787 Cmo-Chr6:4114586 Cmo19g00150 Cmo-Chr19:852910 1.06E-18 dispersed
Cmo16g00065 Cmo-Chr16:295774 Cmo06g00787 Cmo-Chr6:4114586 6.48E-07 dispersed
Cmo18g01340 Cmo-Chr18:12680308 Cmo06g00787 Cmo-Chr6:4114586 4.12E-06 dispersed
Cmo01g00851 Cmo-Chr1:4522323 Cmo06g00787 Cmo-Chr6:4114586 3.76E-139 transposed
Cmo16g01109 Cmo-Chr16:7834107 Cmo06g00787 Cmo-Chr6:4114586 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g504 . . . . . . . . Cmo06g00787 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi07g01326 . . Cme06g02610 . . . . . . . . . . . Cma06g00767 . . Car16g01008 . . . . . . . . . . . . . . . . . . Chy06g02021 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002306 0 0 1 1 1 3 2 1 2 4 1 1 2 4 4 2 1 1 2 2 1 2 1 4 2 2 1 4 1 5 58
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g00787 Cmo_Chr06 FPKM 4.720189 5.704649 5.385926 4.880435 5.654031 5.75455 6.301944 5.398476 4.939072 4.287178