Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00794 ATGGCTTCCAAATCTTCAGCCATGTTCTTCATCCTCTTAATCTCCATGGCCTTATCATTGCCACCAATTTACGCTTGTACTCCTTGCACCCAGCCCCACCCTCCTTACCCGCCCTACCACCGCCCTTCCCACCCTAAAATTCCACATCCAAAACCCCACCATCCACCCCACCATGGTGGAGGTGGAGGCGGAGGAGGCGGCGGTGGTGGCAGCCGTGGAGGAGGTGGTGGAGGTGGGGGAGGTGGTAGTCGAGGAGGTGGTGGCGGTGGAGGTGGAGGTGGAGGGGGAGGTCATCAACACCCACCTATTGTGATTCCCCCACCAGTGATCACCCCTTCACCACCATCCACCACTTACCCTCCTTACACTGGCCCTCCTCCAAGCGGCGGAGGTGGTGGTGGTGGAGGAGGAGGAGGAGGAGGAGGCGGAGGAAGTGGTGGTTCAGGTTCAGGGCAATACCCACCGCCTCCAGCTCAACCAACATGTCCAATAGATGCATTGAAGCTAGGGTTATGTGTGGATGTGCTTGGAGGGTTGGTGCATATTGGGTTAGGGAATCCAGTGGAGAATGCATGCTGTCCAGTGCTTGGAGGGCTGTTGGAGCTTGAAGCAGCCATATGTCTATGCACAACTTTAAGGATTAAGCTTTTGAATCTCAATATATTCATTCCTTTGGCCCTTCAAGCGCTCATCACTTGTGGCAAGAACCCTCCGCCAGGCTTTGTTTGTCCTCCACTTTAG 741 55.33 MASKSSAMFFILLISMALSLPPIYACTPCTQPHPPYPPYHRPSHPKIPHPKPHHPPHHGGGGGGGGGGGGSRGGGGGGGGGGSRGGGGGGGGGGGGGHQHPPIVIPPPVITPSPPSTTYPPYTGPPPSGGGGGGGGGGGGGGGGSGGSGSGQYPPPPAQPTCPIDALKLGLCVDVLGGLVHIGLGNPVENACCPVLGGLLELEAAICLCTTLRIKLLNLNIFIPLALQALITCGKNPPPGFVCPPL 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4207908 4208648 - CmoCh06G007940.1 Cmo06g00794 384356

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00794 246 Gene3D - 159 245 IPR036312 -
Cmo06g00794 246 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 164 245 IPR036312 -
Cmo06g00794 246 MobiDBLite consensus disorder prediction 36 159 - -
Cmo06g00794 246 PANTHER - 1 245 - -
Cmo06g00794 246 CDD HPS_like 164 243 IPR027923 -
Cmo06g00794 246 PANTHER BIFUNCTIONAL INHIBITOR/LIPID-TRANSFER PROTEIN/SEED STORAGE 2S ALBUMIN SUPERFAMILY PROTEIN 1 245 - -
Cmo06g00794 246 MobiDBLite consensus disorder prediction 101 127 - -
Cmo06g00794 246 Pfam Hydrophobic seed protein 161 244 IPR027923 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00794 - - - csv:101220939 186.422
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00794 Cmo-Chr6:4207908 Cmo11g00520 Cmo-Chr11:2530379 2.83E-39 dispersed
Cmo06g00794 Cmo-Chr6:4207908 Cmo06g00795 Cmo-Chr6:4236234 2.62E-20 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g517 . . Bda06g00034 . . Bpe07g00169 . . Cmo06g00794 . . . . . . . . . . . . . . . Cla10g00268 Cam10g0276 Cec10g0286 Cco10g0280 Clacu10g0278 Cmu10g1118 Cre10g0527 Cone2ag0209 Cone16ag0834 Cone4ag0656 Cone7ag0615 Lsi07g01313 . . Cme06g02586 . . . . . . . Bma12g00636 . . . Cma06g00772 . Car06g00689 . Cpe08g00747 . . . . . . . . . . . . . . . . Csa03g00287 Chy06g02036 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000904 5 2 1 6 4 2 3 2 2 2 3 2 4 2 2 4 2 5 3 2 3 2 3 3 3 3 3 5 2 2 87
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g00794 Cmo_Chr06 FPKM 12.989199 14.080182 12.549635 13.26764 11.715052 12.990885 11.585423 19.978621 19.906061 18.927717