Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00799 ATGAGGGGTATTCCCTTTCAGTTTCAGGGGAAGGGGGAGTTGGAAATTTCAGCCGCTTTTTCTTCTCCGATTTGCTCTGGTTTTGCACAGAAGTGGGTTAAGAAAGGAGAACAACAACAACAACAACAAGAAGCAGAAGAAGAACAAGAAGAAGGTCTTTCTTATTTTGTTTTACCCAACAACGAACCCACTTCCGTTCTTCATATGAGAAGCCCCAGTCCTCCCACATCGGCTTCTACTCTCTCTTCTTCCTTTGGGGGCGGCGGTGCTGGTGGTGGCTGTGTTCCTTCATTTCCGCCGGAGACTCCTTCTGTTGAGCCGCTCCCTGGAGCTGGGGTTGGGACTCCCATTTTTCCCGGTGGACTAGAGCGATGTGGTGTTGGATTAGAAGATTTGGAGAGTATGTGGACGGAATCGGCTGGACCAGAGCAGTCTTTTCTCCGATGGATCGCCGGAGATGTTGTTGAAGATCCCAGTCTAGGGATTAAAACTGTTCTGCAAAATGGGAATATCCCGTTCGATATGGATAGCAATGGCAGTATGGGAATTGTCGATCAGGGTTCCGAATTTGACCCCGCCGCCGCTGCTGCTGCTGCTGCTGCTGCTGCTGGTAATGTTCTTTCTAATATCAATCCTAATTTATCGTTTCCTGTTCCTGCTGCTTGTACTGGGTTTTCTGATGTTAATGGTAGTAATAATAAGCCTTTTAGTAGAACAACTTACAAGAGTTCTTGTTTGGGGTTGAACAATCGCCATGGAAATTTCAATGTTCAGAACCCTATCTTTTCTGGGTCTGTTGAGAATCTTGTTGTTCCTGTTTCTGCCATGATTTATCCTCCGCAGCTTCCGCCATTTGAGGCTCCTGATGAGAAGCCTCAGAATTTGAATGCTCAGGTTTTGTTGAACCAACATCAGCAGCACCCTCAGAATCCTAGTTTTTTTGTGCCATTGGCATTTGGTCAACCGGAACAGCAGCTTCAGCTTCAACTGAAGAGGCACAATTCGAGTGGAGGGGTCGACCCGAACGGGGCGATCCCGAAAGTTCCTTTTATGGATCCAGGGAATGAAATGTTTCTGAGGAATCATCAGCAGGTGCTGCAGCAGCAGCAGCAGCTTGGATATCCATTGGGTTTGCAGTTTCTTCCTCAGCAGAAGGCAATGTCGCCGAAGCCGAAAGTTATAGGGCACGGCGACGACGAAACGGCATATCAGAATCCCCCACAGCAGCAACAGCAACACGCTTTGCTCGACCAGCTCTACAAGGCAGCAGAACTGGTTGGGACAGGGAATTTCTCACACGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTCTCACCTGTTGGAAAGCCCCTTCAAAGGGCTGCTTTCTACTTCAAGGAGGCTCTTCAATTGCTTCTCCTTATGAACAATCCTGTTAATCCTCCTCCACCTCGCTGCCCGACACCGTGTGATGTGATCTTCAAGATGGGTGCTTACAAGGTGTTTTCGGAGATCTCACCACTTATTCAGTTTGTGAATTTCACCTGTAACCAGGCACTACTTGAGGCCCTCGATGATGTCGATCGAATTCACATTGTTGATTTCGATATCGGTTTTGGAGCTCAGTGGGCTTCTTTTATGCAGGAATTGTCCTTGAGGAACCAGGGTGCTCCATCACTAAAAATCACTGCTTTTGCCTCTCCCTCCACACACCATCCCATTGAACTCGGGCTCATGCGCGATAATCTCACTCAATTTGCTAATGACATTGGAATAAGTTTCGAGTTCGAAGTGGTGAACTTTGATTCTTTGAACCAAAACTCCTCCTTGCCGTTTTCTCGTGCAAGCGAAAACGAGGCTATTGCAGTAAACTTCCCTCTATGGTCCTCATCAAATCAACCAGCAATGCTTCCGTCTCTCCTCCGTTTCATCAAGCAACTCTCACCAAAAATCGTGGTATCACTGGATCGAGGGTGTGATCGAAGTGACCTCCCATTTCCTCAGCATATGCTTCAGGCACTTCAATCCTACATTAACCTCCTGGAATCTCTGGATGCTATCAATATGAATTCGGATGCAATCAACAAGATCGAGAGGTTTCTTTTGCAACCAAGAATCGAAAGCACTGTTCTGGGGCGGCTTCGAGTACCTGAAAGAATGCCCCTATGGAAGACGCTTTTCGCCTCAGCTGGGTACATGCCAGTAACATTCAGCAACTTTACCGAAACTCAAGCCGAATGTGTAGCAAAGAGAACTTCTGTGAGGGGATTTCATGTCGAGAAACGCCAGGCTTCCCTTGTTTTTTGCTGGCAGCGCCGGGAGCTCATATCTGCTTCAGCTTGGAGGTGTTGA 2334 47.81 MRGIPFQFQGKGELEISAAFSSPICSGFAQKWVKKGEQQQQQQEAEEEQEEGLSYFVLPNNEPTSVLHMRSPSPPTSASTLSSSFGGGGAGGGCVPSFPPETPSVEPLPGAGVGTPIFPGGLERCGVGLEDLESMWTESAGPEQSFLRWIAGDVVEDPSLGIKTVLQNGNIPFDMDSNGSMGIVDQGSEFDPAAAAAAAAAAAGNVLSNINPNLSFPVPAACTGFSDVNGSNNKPFSRTTYKSSCLGLNNRHGNFNVQNPIFSGSVENLVVPVSAMIYPPQLPPFEAPDEKPQNLNAQVLLNQHQQHPQNPSFFVPLAFGQPEQQLQLQLKRHNSSGGVDPNGAIPKVPFMDPGNEMFLRNHQQVLQQQQQLGYPLGLQFLPQQKAMSPKPKVIGHGDDETAYQNPPQQQQQHALLDQLYKAAELVGTGNFSHAQGILARLNHQLSPVGKPLQRAAFYFKEALQLLLLMNNPVNPPPPRCPTPCDVIFKMGAYKVFSEISPLIQFVNFTCNQALLEALDDVDRIHIVDFDIGFGAQWASFMQELSLRNQGAPSLKITAFASPSTHHPIELGLMRDNLTQFANDIGISFEFEVVNFDSLNQNSSLPFSRASENEAIAVNFPLWSSSNQPAMLPSLLRFIKQLSPKIVVSLDRGCDRSDLPFPQHMLQALQSYINLLESLDAINMNSDAINKIERFLLQPRIESTVLGRLRVPERMPLWKTLFASAGYMPVTFSNFTETQAECVAKRTSVRGFHVEKRQASLVFCWQRRELISASAWRC 777
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4278969 4281302 + CmoCh06G007990.1 Cmo06g00799 384361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00799 777 Pfam GRAS domain family 416 776 IPR005202 -
Cmo06g00799 777 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 31 776 IPR005202 -
Cmo06g00799 777 MobiDBLite consensus disorder prediction 67 92 - -
Cmo06g00799 777 ProSiteProfiles GRAS family profile. 406 776 IPR005202 -
Cmo06g00799 777 MobiDBLite consensus disorder prediction 67 86 - -
Cmo06g00799 777 PANTHER SCARECROW-LIKE PROTEIN 6 31 776 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g00799 Cmo17g00454 CCT
Cmo06g00799 Cmo16g01195 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00799 Cmo-Chr6:4278969 Cmo17g00454 Cmo-Chr17:3141301 1.25E-158 dispersed
Cmo16g01195 Cmo-Chr16:8521675 Cmo06g00799 Cmo-Chr6:4278969 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9962 PF03514 GRAS 2.00E-93 CL0063 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00799 - - bhj:120090454 1230.31