Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00800 ATGGCTTCTTCAATTGCTCTCCGAAGGCTGGCCGCTTCCTCCGCCGCTAAGCTCTTCAGTCCTGTTCGTTCCGCTTCTGTCCTTCCTTCTGTCGGTCGTTCTTTCAACACTAACGCTCAGATTGCTAGTTACGACGACGAAGACCGCTCCGTCGATTTGGACAGCCGCCGGAGCGGTTCTCTCTCTCGTTATCGTGATCGCTTCCCTGGTTTTGCAGATGTGTGCGATCATTTTTCGCTGAACCGGAGCCTGAGTCAGGTCCTGAATCTGATGGACCAGTTCATGGAGGATCCAATTCTGGCAGCTTCACGAGGAGTTGGAGCAGGATCAAGGAGGGGCTGGGACGTAAGAGAAAACGAGGACGCTCTGTACTTGCGAATGGACATGCCTGGACTGAGCAAAGAAGATGTGAAAGTGAGCGTGGAGCAGAACACACTGATAATCAAAGGCGAAGCTGCAAAGGAATCCGAATACGAGGAGGACCGTCGACGATTCTCAAGCCGACTGGATTTGCCCGACAACCTCTACCAGCTGGATTCGATCAAAGCAGAAATGAAAAATGGTGTTCTGAAATTGAGCGTGCCGAAGGTGAAGGAAGAAGAGAGGAAGGATGTGAAGCATGTTACAGTCGAGTAG 636 51.57 MASSIALRRLAASSAAKLFSPVRSASVLPSVGRSFNTNAQIASYDDEDRSVDLDSRRSGSLSRYRDRFPGFADVCDHFSLNRSLSQVLNLMDQFMEDPILAASRGVGAGSRRGWDVRENEDALYLRMDMPGLSKEDVKVSVEQNTLIIKGEAAKESEYEEDRRRFSSRLDLPDNLYQLDSIKAEMKNGVLKLSVPKVKEEERKDVKHVTVE 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4285176 4287336 - CmoCh06G008000.1 Cmo06g00800 384362

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00800 211 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 105 211 IPR002068 -
Cmo06g00800 211 Pfam Hsp20/alpha crystallin family 115 210 IPR002068 -
Cmo06g00800 211 CDD ACD_sHsps-like 115 196 - -
Cmo06g00800 211 Gene3D - 71 210 IPR008978 -
Cmo06g00800 211 PANTHER HEAT SHOCK 22 KDA PROTEIN, MITOCHONDRIAL-LIKE 1 211 - -
Cmo06g00800 211 PANTHER 23.5 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 1 211 IPR044656 -
Cmo06g00800 211 SUPERFAMILY HSP20-like chaperones 84 204 IPR008978 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00800 K13993 HSP20; HSP20 family protein - csv:101219106 294.664
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g00800 Cmo16g01193 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00800 Cmo-Chr6:4285176 Cmo15g01062 Cmo-Chr15:6921213 3.43E-23 dispersed
Cmo04g01905 Cmo-Chr4:9714250 Cmo06g00800 Cmo-Chr6:4285176 1.59E-23 transposed
Cmo14g01373 Cmo-Chr14:11333320 Cmo06g00800 Cmo-Chr6:4285176 1.09E-17 transposed
Cmo16g01193 Cmo-Chr16:8503803 Cmo06g00800 Cmo-Chr6:4285176 6.67E-123 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g533 . . . Bda08g00575 . . . . Cmo06g00800 Cmo16g01193 . . . . Sed04g1717 . . Bhi11g00196 Tan01g2027 Cmetu06g0652 . . . . . . . . . . . . . . . Lsi07g01303 . . Cme06g02574 . . . . . . . . . . . Cma06g00780 . Car06g00694 . Cpe08g00743 . . . . . . . . . . . . . . . . Csa03g00277 Chy06g02045 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002899 1 4 2 2 1 2 3 2 2 2 2 2 2 2 2 1 2 2 2 2 2 1 1 1 1 1 1 2 1 3 54
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g00800 Cmo_Chr06 FPKM 25.597727 25.803463 32.147209 30.943377 25.162891 22.559599 25.180065 28.615185 29.801067 32.61005