Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00816 ATGGAAGATCCTCTTCAGAGATTCCAGTTTCAGTCGTCGTCGTCGGACATGAAAGAAAAGAACTCGAAGAAGATGAAGCTCGGGAACGACGGCAAGCATCCGACATATCGCGGCGTCCGAATGCGGCAATGGGGAAAATGGGTATCAGAAATCAGAGAACCCAAGAAGAAATCCAGAATTTGGTTGGGTACATTTTCCACTCCAGAAATGGCCGCCAGAGCTCACGACGTCGCCGCCAGAACCATCAAAGGTCACTCCGCTTACCTCAACTTCCCGGAGTTGGCTCACCGCTTCCCTCGTCCCGCTAGCTCCTCCGCTAAGGACATTCGAGCCGCCGCCGCCAAAGCCGCGACGTTTCCTATTAATTCCACTGATGAAGACGACGACGATGCCGCCTCTCAATCCGACCGCAACCGCTCTCCCTCCTCTGTCGCCGCCGCCGCGAAATCTCCTGGCGAAATCGATGATCCGTTCTTCGATCTTCCCGATCTGTTTCTTCATCCCAATCACCAAATTGGTACATTCTGTTTCTCTCAAATGCTTCCGATTGACGGCTTCGACTCTGCTTTCGGCCGCCCGCCGTCGCCGTCGGAATATTTCGCCGCCACTCCTCCTTGA 618 54.37 MEDPLQRFQFQSSSSDMKEKNSKKMKLGNDGKHPTYRGVRMRQWGKWVSEIREPKKKSRIWLGTFSTPEMAARAHDVAARTIKGHSAYLNFPELAHRFPRPASSSAKDIRAAAAKAATFPINSTDEDDDDAASQSDRNRSPSSVAAAAKSPGEIDDPFFDLPDLFLHPNHQIGTFCFSQMLPIDGFDSAFGRPPSPSEYFAATPP 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4423340 4423957 - CmoCh06G008160.1 Cmo06g00816 384378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00816 205 MobiDBLite consensus disorder prediction 1 16 - -
Cmo06g00816 205 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 16 176 - -
Cmo06g00816 205 MobiDBLite consensus disorder prediction 118 153 - -
Cmo06g00816 205 Gene3D AP2/ERF domain 35 93 IPR036955 GO:0003700|GO:0006355
Cmo06g00816 205 MobiDBLite consensus disorder prediction 1 38 - -
Cmo06g00816 205 SUPERFAMILY DNA-binding domain 35 93 IPR016177 GO:0003677
Cmo06g00816 205 Pfam AP2 domain 34 85 IPR001471 GO:0003700|GO:0006355
Cmo06g00816 205 ProSiteProfiles AP2/ERF domain profile. 35 92 IPR001471 GO:0003700|GO:0006355
Cmo06g00816 205 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF043 16 176 - -
Cmo06g00816 205 PRINTS Ethylene responsive element binding protein signature 36 47 IPR001471 GO:0003700|GO:0006355
Cmo06g00816 205 PRINTS Ethylene responsive element binding protein signature 58 74 IPR001471 GO:0003700|GO:0006355
Cmo06g00816 205 CDD AP2 36 94 IPR001471 GO:0003700|GO:0006355
Cmo06g00816 205 SMART rav1_2 35 98 IPR001471 GO:0003700|GO:0006355
Cmo06g00816 205 MobiDBLite consensus disorder prediction 17 37 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00816 Cmo-Chr6:4423340 Cmo12g01298 Cmo-Chr12:11419240 1.61E-44 dispersed
Cmo16g01177 Cmo-Chr16:8390470 Cmo06g00816 Cmo-Chr6:4423340 1.75E-101 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9963 PF00847 AP2 4.30E-13 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00816 - - cmos:111449391 379.407