Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo06g00821 | ATGCATATTGAGGAATTGAAGGAAGGGGAGTTGCAGAGTGGGGAAGAGGGAAATTCAGGTTCCATTGTAAGTAATTTGGAGGACCAGAGCGTTATTAGGTCTGATGTTAAAAGGATCGTTGTTGGAGTTGGGGCTCGTGTTCTTTTCTACCCGACTTTGCTTTACAATGTTTTCAGAAATAAGCTTCAGACGGAGTTTCGTTGGTGGGACAGGGTCGATGAGTTTATATTGTTAGGTGCTGTTCCATTCCCTGCCGATGTTCCCCGTTTGAAGGAGGTTGGCGTTGGAGGAGTGATAACACTAAATGAGCCATATGAGACTTTGGTTCCTTCAACTCTATATCGTGATTATGACATTGATCATCTGACCATTCCAACTAGAGACTATTGCTTTGCACCTTTATTGAGTGACATTTGCATTGCTACAAATTTCATCCACAAAAATGCATTGCACGGACAGACTACATATGTTCATTGTAAAGCTGGACGAGGGCGTAGCACAACCGTTGTTATCTGCTATTTGGTGCAATACAAGCAAATGACGCCAGATGAAGCTTACAAACACGTGAAGTCAATCAGGCCAAGGGTGCTTCTAGCATCATCACAGTGGCAGGCTGTCCTGGAATTCTACCACATGATTGTTCAGAAGGATGTTTCCTTCTGCCACATAGATGATCTAGGAAAGAAAGTATCTGGATCATCACACGATCTTATCACATTTGATGATAGTTCTGTAGTTGTTGTAAAAGGATCTGATCTCGAAGGATATGACCCAAGTATCAGCCAAAGTGAAATGGGCGATATCTGGGCAGATTTAAATGTGGTCTGCAGAGTTCGTGTTGCTGGTCAGGCAGCCCTCACAAGAATCTCCTGTTTGTGGCTCAGCTATCGAGAAAAACACCATAGCAAGAAAATTTCAGGAGATGATCTAGGTGTTGGGAAGGGCTGTTCACTCAGTGCTGCTCATTTGGAAGGGTTCAGTGTGGACATCCATGTCTATTAA | 1002 | 43.41 | MHIEELKEGELQSGEEGNSGSIVSNLEDQSVIRSDVKRIVVGVGARVLFYPTLLYNVFRNKLQTEFRWWDRVDEFILLGAVPFPADVPRLKEVGVGGVITLNEPYETLVPSTLYRDYDIDHLTIPTRDYCFAPLLSDICIATNFIHKNALHGQTTYVHCKAGRGRSTTVVICYLVQYKQMTPDEAYKHVKSIRPRVLLASSQWQAVLEFYHMIVQKDVSFCHIDDLGKKVSGSSHDLITFDDSSVVVVKGSDLEGYDPSISQSEMGDIWADLNVVCRVRVAGQAALTRISCLWLSYREKHHSKKISGDDLGVGKGCSLSAAHLEGFSVDIHVY | 333 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 4459681 | 4464668 | + | CmoCh06G008210.1 | Cmo06g00821 | 384383 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo06g00821 | 333 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 157 | 167 | IPR016130 | GO:0016311|GO:0016791 | |
Cmo06g00821 | 333 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 62 | 214 | IPR029021 | - | |
Cmo06g00821 | 333 | CDD | PTPMT1 | 68 | 210 | IPR044596 | GO:0004721 | |
Cmo06g00821 | 333 | PANTHER | - | 1 | 333 | - | - | |
Cmo06g00821 | 333 | Pfam | Dual specificity phosphatase, catalytic domain | 112 | 210 | IPR000340 | GO:0008138|GO:0016311 | |
Cmo06g00821 | 333 | PANTHER | DUAL SPECIFICITY PROTEIN PHOSPHATASE DSP8-RELATED | 1 | 333 | - | - | |
Cmo06g00821 | 333 | Gene3D | Protein tyrosine phosphatase superfamily | 68 | 219 | IPR029021 | - | |
Cmo06g00821 | 333 | SMART | dsp_5 | 71 | 212 | IPR020422 | GO:0006470|GO:0008138 | |
Cmo06g00821 | 333 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Cmo06g00821 | 333 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 152 | 204 | IPR000387 | GO:0016311|GO:0016791 | |
Cmo06g00821 | 333 | ProSiteProfiles | Dual specificity protein phosphatase domain profile. | 68 | 215 | IPR020422 | GO:0006470|GO:0008138 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo06g00821 | Cmo-Chr6:4459681 | Cmo12g01314 | Cmo-Chr12:11499281 | 1.24E-95 | dispersed | |
Cmo16g01171 | Cmo-Chr16:8345053 | Cmo06g00821 | Cmo-Chr6:4459681 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo06g00821 | - | - | csv:101222975 | 605.905 |