Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00821 ATGCATATTGAGGAATTGAAGGAAGGGGAGTTGCAGAGTGGGGAAGAGGGAAATTCAGGTTCCATTGTAAGTAATTTGGAGGACCAGAGCGTTATTAGGTCTGATGTTAAAAGGATCGTTGTTGGAGTTGGGGCTCGTGTTCTTTTCTACCCGACTTTGCTTTACAATGTTTTCAGAAATAAGCTTCAGACGGAGTTTCGTTGGTGGGACAGGGTCGATGAGTTTATATTGTTAGGTGCTGTTCCATTCCCTGCCGATGTTCCCCGTTTGAAGGAGGTTGGCGTTGGAGGAGTGATAACACTAAATGAGCCATATGAGACTTTGGTTCCTTCAACTCTATATCGTGATTATGACATTGATCATCTGACCATTCCAACTAGAGACTATTGCTTTGCACCTTTATTGAGTGACATTTGCATTGCTACAAATTTCATCCACAAAAATGCATTGCACGGACAGACTACATATGTTCATTGTAAAGCTGGACGAGGGCGTAGCACAACCGTTGTTATCTGCTATTTGGTGCAATACAAGCAAATGACGCCAGATGAAGCTTACAAACACGTGAAGTCAATCAGGCCAAGGGTGCTTCTAGCATCATCACAGTGGCAGGCTGTCCTGGAATTCTACCACATGATTGTTCAGAAGGATGTTTCCTTCTGCCACATAGATGATCTAGGAAAGAAAGTATCTGGATCATCACACGATCTTATCACATTTGATGATAGTTCTGTAGTTGTTGTAAAAGGATCTGATCTCGAAGGATATGACCCAAGTATCAGCCAAAGTGAAATGGGCGATATCTGGGCAGATTTAAATGTGGTCTGCAGAGTTCGTGTTGCTGGTCAGGCAGCCCTCACAAGAATCTCCTGTTTGTGGCTCAGCTATCGAGAAAAACACCATAGCAAGAAAATTTCAGGAGATGATCTAGGTGTTGGGAAGGGCTGTTCACTCAGTGCTGCTCATTTGGAAGGGTTCAGTGTGGACATCCATGTCTATTAA 1002 43.41 MHIEELKEGELQSGEEGNSGSIVSNLEDQSVIRSDVKRIVVGVGARVLFYPTLLYNVFRNKLQTEFRWWDRVDEFILLGAVPFPADVPRLKEVGVGGVITLNEPYETLVPSTLYRDYDIDHLTIPTRDYCFAPLLSDICIATNFIHKNALHGQTTYVHCKAGRGRSTTVVICYLVQYKQMTPDEAYKHVKSIRPRVLLASSQWQAVLEFYHMIVQKDVSFCHIDDLGKKVSGSSHDLITFDDSSVVVVKGSDLEGYDPSISQSEMGDIWADLNVVCRVRVAGQAALTRISCLWLSYREKHHSKKISGDDLGVGKGCSLSAAHLEGFSVDIHVY 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4459681 4464668 + CmoCh06G008210.1 Cmo06g00821 384383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00821 333 ProSitePatterns Tyrosine specific protein phosphatases active site. 157 167 IPR016130 GO:0016311|GO:0016791
Cmo06g00821 333 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 62 214 IPR029021 -
Cmo06g00821 333 CDD PTPMT1 68 210 IPR044596 GO:0004721
Cmo06g00821 333 PANTHER - 1 333 - -
Cmo06g00821 333 Pfam Dual specificity phosphatase, catalytic domain 112 210 IPR000340 GO:0008138|GO:0016311
Cmo06g00821 333 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE DSP8-RELATED 1 333 - -
Cmo06g00821 333 Gene3D Protein tyrosine phosphatase superfamily 68 219 IPR029021 -
Cmo06g00821 333 SMART dsp_5 71 212 IPR020422 GO:0006470|GO:0008138
Cmo06g00821 333 MobiDBLite consensus disorder prediction 1 22 - -
Cmo06g00821 333 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 152 204 IPR000387 GO:0016311|GO:0016791
Cmo06g00821 333 ProSiteProfiles Dual specificity protein phosphatase domain profile. 68 215 IPR020422 GO:0006470|GO:0008138
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00821 Cmo-Chr6:4459681 Cmo12g01314 Cmo-Chr12:11499281 1.24E-95 dispersed
Cmo16g01171 Cmo-Chr16:8345053 Cmo06g00821 Cmo-Chr6:4459681 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00821 - - csv:101222975 605.905