Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00826 ATGATGTACGGACAGAGTAATAGCTCTGAATCGGATTTTGTTCTTCTCGAATCCATACGCCGCCATTTGTTGGTAGATTCTGATTCTCTTCGATGTGGGAATTTCGCCGTCGCCGGAGCCACCGCCCCTGTTTTCTGCCGGACCTCCAGTTTCGGAAGCTTGTACCCTTGTTTGACTGAAAAATGGGGTGCTCTGCCTCTCAGAGAGGATGATTCCGAGGACATGGTTCTCGCCGGAGTCCTCCACGACGCTGTTCAGTTCGGCTGGGTTCCCTCGCTCGGATCTTCCTTGCCGGAGGCTTTCAATTTTGGTTTTTCCGATGTCAAGCCTGAGCCGGAGATTCTCCCGCCGGTGAACATCTTGCCGGAAGTTATCGAGACGAAGGTGGCCGTGGCAGTGGCAGATCCGTTGCCGGCGGTTGTTCCTGCGAAGGGGAAGCATTACCGGGGAGTCAGGCAGCGGCCGTGGGGGAAGTTTGCGGCGGAGATTCGTGATCCGGCGAAAAATGGGGCTCGGGTTTGGCTTGGGACATTTGAGACGGCGGAGGATGCAGCGTTGGCTTATGACCGAGCCGCTTATCGCATGCGCGGCTCTAAAGCTCTTCTTAATTTCCCGCTTCGAGTTAATTCTGGTGAACCCGACCCGGTTCGAGTGACGTCGAAGCGGTCGTCGTCCCGGTCGTCACCGGAGCCCACTTCTTCGTGTACGTCGGTGGAGAGTGGGTCCCCTAAGAGGCGGAAGAAGACAGACGGCACGACAATGCCGACGGCTCAAGCTGCGCCGGAGTCGATACAATTAGGGGAGGGGACCAATGCAATACAAGTGGAAACTGACGTGGCAAAGTACACAAGTGGCGAGCAATGA 864 56.25 MMYGQSNSSESDFVLLESIRRHLLVDSDSLRCGNFAVAGATAPVFCRTSSFGSLYPCLTEKWGALPLREDDSEDMVLAGVLHDAVQFGWVPSLGSSLPEAFNFGFSDVKPEPEILPPVNILPEVIETKVAVAVADPLPAVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSKALLNFPLRVNSGEPDPVRVTSKRSSSRSSPEPTSSCTSVESGSPKRRKKTDGTTMPTAQAAPESIQLGEGTNAIQVETDVAKYTSGEQ 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4490152 4491015 + CmoCh06G008260.1 Cmo06g00826 384388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00826 287 MobiDBLite consensus disorder prediction 209 272 - -
Cmo06g00826 287 MobiDBLite consensus disorder prediction 216 240 - -
Cmo06g00826 287 CDD AP2 146 205 IPR001471 GO:0003700|GO:0006355
Cmo06g00826 287 MobiDBLite consensus disorder prediction 252 272 - -
Cmo06g00826 287 Pfam AP2 domain 147 197 IPR001471 GO:0003700|GO:0006355
Cmo06g00826 287 PRINTS Ethylene responsive element binding protein signature 148 159 IPR001471 GO:0003700|GO:0006355
Cmo06g00826 287 PRINTS Ethylene responsive element binding protein signature 171 187 IPR001471 GO:0003700|GO:0006355
Cmo06g00826 287 Gene3D AP2/ERF domain 146 208 IPR036955 GO:0003700|GO:0006355
Cmo06g00826 287 SUPERFAMILY DNA-binding domain 147 207 IPR016177 GO:0003677
Cmo06g00826 287 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1-RELATED 37 250 - -
Cmo06g00826 287 ProSiteProfiles AP2/ERF domain profile. 147 205 IPR001471 GO:0003700|GO:0006355
Cmo06g00826 287 SMART rav1_2 147 211 IPR001471 GO:0003700|GO:0006355
Cmo06g00826 287 PANTHER DNA-BINDING DOMAIN 37 250 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00826 Cmo-Chr6:4490152 Cmo16g01167 Cmo-Chr16:8316409 1.32E-133 dispersed
Cmo06g00964 Cmo-Chr6:7555782 Cmo06g00826 Cmo-Chr6:4490152 1.51E-29 dispersed
Cmo17g01312 Cmo-Chr17:10273416 Cmo06g00826 Cmo-Chr6:4490152 4.48E-29 dispersed
Cmo06g00825 Cmo-Chr6:4480571 Cmo06g00826 Cmo-Chr6:4490152 9.08E-31 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9967 PF00847 AP2 1.20E-14 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00826 K09286 - csv:101203663 419.083