Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo06g00826 | ATGATGTACGGACAGAGTAATAGCTCTGAATCGGATTTTGTTCTTCTCGAATCCATACGCCGCCATTTGTTGGTAGATTCTGATTCTCTTCGATGTGGGAATTTCGCCGTCGCCGGAGCCACCGCCCCTGTTTTCTGCCGGACCTCCAGTTTCGGAAGCTTGTACCCTTGTTTGACTGAAAAATGGGGTGCTCTGCCTCTCAGAGAGGATGATTCCGAGGACATGGTTCTCGCCGGAGTCCTCCACGACGCTGTTCAGTTCGGCTGGGTTCCCTCGCTCGGATCTTCCTTGCCGGAGGCTTTCAATTTTGGTTTTTCCGATGTCAAGCCTGAGCCGGAGATTCTCCCGCCGGTGAACATCTTGCCGGAAGTTATCGAGACGAAGGTGGCCGTGGCAGTGGCAGATCCGTTGCCGGCGGTTGTTCCTGCGAAGGGGAAGCATTACCGGGGAGTCAGGCAGCGGCCGTGGGGGAAGTTTGCGGCGGAGATTCGTGATCCGGCGAAAAATGGGGCTCGGGTTTGGCTTGGGACATTTGAGACGGCGGAGGATGCAGCGTTGGCTTATGACCGAGCCGCTTATCGCATGCGCGGCTCTAAAGCTCTTCTTAATTTCCCGCTTCGAGTTAATTCTGGTGAACCCGACCCGGTTCGAGTGACGTCGAAGCGGTCGTCGTCCCGGTCGTCACCGGAGCCCACTTCTTCGTGTACGTCGGTGGAGAGTGGGTCCCCTAAGAGGCGGAAGAAGACAGACGGCACGACAATGCCGACGGCTCAAGCTGCGCCGGAGTCGATACAATTAGGGGAGGGGACCAATGCAATACAAGTGGAAACTGACGTGGCAAAGTACACAAGTGGCGAGCAATGA | 864 | 56.25 | MMYGQSNSSESDFVLLESIRRHLLVDSDSLRCGNFAVAGATAPVFCRTSSFGSLYPCLTEKWGALPLREDDSEDMVLAGVLHDAVQFGWVPSLGSSLPEAFNFGFSDVKPEPEILPPVNILPEVIETKVAVAVADPLPAVVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSKALLNFPLRVNSGEPDPVRVTSKRSSSRSSPEPTSSCTSVESGSPKRRKKTDGTTMPTAQAAPESIQLGEGTNAIQVETDVAKYTSGEQ | 287 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 4490152 | 4491015 | + | CmoCh06G008260.1 | Cmo06g00826 | 384388 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo06g00826 | 287 | MobiDBLite | consensus disorder prediction | 209 | 272 | - | - | |
Cmo06g00826 | 287 | MobiDBLite | consensus disorder prediction | 216 | 240 | - | - | |
Cmo06g00826 | 287 | CDD | AP2 | 146 | 205 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo06g00826 | 287 | MobiDBLite | consensus disorder prediction | 252 | 272 | - | - | |
Cmo06g00826 | 287 | Pfam | AP2 domain | 147 | 197 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo06g00826 | 287 | PRINTS | Ethylene responsive element binding protein signature | 148 | 159 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo06g00826 | 287 | PRINTS | Ethylene responsive element binding protein signature | 171 | 187 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo06g00826 | 287 | Gene3D | AP2/ERF domain | 146 | 208 | IPR036955 | GO:0003700|GO:0006355 | |
Cmo06g00826 | 287 | SUPERFAMILY | DNA-binding domain | 147 | 207 | IPR016177 | GO:0003677 | |
Cmo06g00826 | 287 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1-RELATED | 37 | 250 | - | - | |
Cmo06g00826 | 287 | ProSiteProfiles | AP2/ERF domain profile. | 147 | 205 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo06g00826 | 287 | SMART | rav1_2 | 147 | 211 | IPR001471 | GO:0003700|GO:0006355 | |
Cmo06g00826 | 287 | PANTHER | DNA-BINDING DOMAIN | 37 | 250 | IPR044808 | GO:0003700|GO:0009873 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo06g00826 | Cmo-Chr6:4490152 | Cmo16g01167 | Cmo-Chr16:8316409 | 1.32E-133 | dispersed | |
Cmo06g00964 | Cmo-Chr6:7555782 | Cmo06g00826 | Cmo-Chr6:4490152 | 1.51E-29 | dispersed | |
Cmo17g01312 | Cmo-Chr17:10273416 | Cmo06g00826 | Cmo-Chr6:4490152 | 4.48E-29 | dispersed | |
Cmo06g00825 | Cmo-Chr6:4480571 | Cmo06g00826 | Cmo-Chr6:4490152 | 9.08E-31 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9967 | PF00847 | AP2 | 1.20E-14 | CL0081 | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo06g00826 | K09286 | - | csv:101203663 | 419.083 |