Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00835 ATGGGCAAGCAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCACTCTGGCGCAATGGGCCTCCCGATAAGCCAGTATTGTGCAACGCATGTGGATCTCGATGGAGGACGAAGGGAAGTCTTGCAAACTATACCCCTCTTCATGCTCGAGCAGATCCTGATGAGTACGATGATAAAAGGCTCTCTAGGTTGAAGAACTCGTCCGTGTATAAGAACAAAGAAGTGAAACTGCTTAAAAGAAAGCACTATCAAGATCATGGAGTTGTGGTTGGGGTTATCCCTGATCATGCTCAGAGCTTCCACAAGGCAGTGGATGAAGATACAAGTAATCGATCAAGTTCTGGATCAGCCATATCGAATTCCGAGAGCTGTGCACAATTCGGTGGCGCCGATGGAAGTGATCTGACAGGTCCCTCACAGTCGACAGCTTGGGAGTCAATGGTGCCTTCGAGAAAGAGGACCTGTGTTGATCGTCCGAAGTCTACTGCAGTCGAGAAACTCACTAAAGATCTATACACCATTTTACGTGAACAGAAGTCGTATTTCTCTGGATCTTCTGAGGAGGATTTGCTTTTCGAGAGTGAAACTCCAATGGTCTCTGTAGAGATAGGTCATGGGAGCATTCTCATGAGGCATCCAAGTTCCATTGCTCGAGAAGAGGAGTCGGAAGCAAGCTCAATCTCAATTGATCATAAACATTTCTCTGTAAACGAGGCTTATTCAGAGTCGTCCATCGTTCCTTCTACTCTTGGAATCGGGAGAAAGCACTCTAACGGACAGGCGTTCTTGCAGGAGCAAATCAAAAAGGACAGGCCTCAATCGGAGAAAGTGCAAGCGCTTGGGAATCATAACTCGCCTCTCTGTAATATCGATCTAACTGTCATTCTAAACTTCAGAGAGTTTACGAAGCAATTGACGTGTGAAGATCAACGAGAATTAATGAAGTATTTGCCTTCTGTTGATACTGAAGAGCTTCCAGACAGCTTGAATAGCATGTTTGAAAGCCCCCAATTCAAGGAGAATTTGAATTCATTTAAGCAGCTGCTCACTGAAGGAGTCTTCGATTTCTCCTTTCCGGGTGCTAAACGAGAAGACTGCAAGACGTTGAGTCGACTTGTGTTGTGGGATTTGTCTAAATCAAAATGGGTGGAACAATACGATCGACTTAAGAAATGTTCTACTAGCTTTGTGGATGACAAGAGATTGCTTGATGGTCAAAACAAAAAGTTTTCAGAAACAAGGATTACAATGACGAGTCCGAGAAGGGTGACGACGAAGACTAGCGTAGAAAGCAAGGAACTCGTTGACGACAGTTTTTGCTTTAGTCCAAGAAGTTTATTTGCTTTGCCATCTGATGGAAGTTCCTTCACATTGGAATCTCTACATTTTGATGAGGATAGTTTTGACCAGGATCTCTTGCTCGATGTGAGGTCGAACAGCTCGTTCCCACAAGCGGAACTCCTGAGTTTTGGTGGTGAACAAGCAAGCAATAGTAGTAGTTCGATAAATCTACGACTTATGCATCGTTGA 1533 44.55 MGKQGPCYHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGSLANYTPLHARADPDEYDDKRLSRLKNSSVYKNKEVKLLKRKHYQDHGVVVGVIPDHAQSFHKAVDEDTSNRSSSGSAISNSESCAQFGGADGSDLTGPSQSTAWESMVPSRKRTCVDRPKSTAVEKLTKDLYTILREQKSYFSGSSEEDLLFESETPMVSVEIGHGSILMRHPSSIAREEESEASSISIDHKHFSVNEAYSESSIVPSTLGIGRKHSNGQAFLQEQIKKDRPQSEKVQALGNHNSPLCNIDLTVILNFREFTKQLTCEDQRELMKYLPSVDTEELPDSLNSMFESPQFKENLNSFKQLLTEGVFDFSFPGAKREDCKTLSRLVLWDLSKSKWVEQYDRLKKCSTSFVDDKRLLDGQNKKFSETRITMTSPRRVTTKTSVESKELVDDSFCFSPRSLFALPSDGSSFTLESLHFDEDSFDQDLLLDVRSNSSFPQAELLSFGGEQASNSSSSINLRLMHR 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4586921 4592240 + CmoCh06G008350.1 Cmo06g00835 384397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00835 510 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Cmo06g00835 510 CDD ZnF_GATA 6 51 IPR000679 GO:0006355|GO:0043565
Cmo06g00835 510 MobiDBLite consensus disorder prediction 103 158 - -
Cmo06g00835 510 Gene3D - 3 83 IPR013088 GO:0006355|GO:0008270
Cmo06g00835 510 Gene3D - 277 360 IPR038108 -
Cmo06g00835 510 Pfam Asx homology domain 273 366 IPR028020 -
Cmo06g00835 510 PANTHER GATA TRANSCRIPTION FACTOR 26 1 509 - -
Cmo06g00835 510 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 44 - -
Cmo06g00835 510 PANTHER OSJNBB0038F03.10 PROTEIN 1 509 IPR044589 -
Cmo06g00835 510 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Cmo06g00835 510 MobiDBLite consensus disorder prediction 110 149 - -
Cmo06g00835 510 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 284 393 IPR044867 -
Cmo06g00835 510 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00835 Cmo-Chr6:4586921 Cmo19g00407 Cmo-Chr19:4775225 0 dispersed
Cmo16g01159 Cmo-Chr16:8252858 Cmo06g00835 Cmo-Chr6:4586921 0 wgd
Cmo02g01613 Cmo-Chr2:9274355 Cmo06g00835 Cmo-Chr6:4586921 9.57E-160 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9968 PF13919 ASXH 6.90E-08 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00835 - - csv:101205985 854.358