Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00835 ATGGGCAAGCAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCACTCTGGCGCAATGGGCCTCCCGATAAGCCAGTATTGTGCAACGCATGTGGATCTCGATGGAGGACGAAGGGAAGTCTTGCAAACTATACCCCTCTTCATGCTCGAGCAGATCCTGATGAGTACGATGATAAAAGGCTCTCTAGGTTGAAGAACTCGTCCGTGTATAAGAACAAAGAAGTGAAACTGCTTAAAAGAAAGCACTATCAAGATCATGGAGTTGTGGTTGGGGTTATCCCTGATCATGCTCAGAGCTTCCACAAGGCAGTGGATGAAGATACAAGTAATCGATCAAGTTCTGGATCAGCCATATCGAATTCCGAGAGCTGTGCACAATTCGGTGGCGCCGATGGAAGTGATCTGACAGGTCCCTCACAGTCGACAGCTTGGGAGTCAATGGTGCCTTCGAGAAAGAGGACCTGTGTTGATCGTCCGAAGTCTACTGCAGTCGAGAAACTCACTAAAGATCTATACACCATTTTACGTGAACAGAAGTCGTATTTCTCTGGATCTTCTGAGGAGGATTTGCTTTTCGAGAGTGAAACTCCAATGGTCTCTGTAGAGATAGGTCATGGGAGCATTCTCATGAGGCATCCAAGTTCCATTGCTCGAGAAGAGGAGTCGGAAGCAAGCTCAATCTCAATTGATCATAAACATTTCTCTGTAAACGAGGCTTATTCAGAGTCGTCCATCGTTCCTTCTACTCTTGGAATCGGGAGAAAGCACTCTAACGGACAGGCGTTCTTGCAGGAGCAAATCAAAAAGGACAGGCCTCAATCGGAGAAAGTGCAAGCGCTTGGGAATCATAACTCGCCTCTCTGTAATATCGATCTAACTGTCATTCTAAACTTCAGAGAGTTTACGAAGCAATTGACGTGTGAAGATCAACGAGAATTAATGAAGTATTTGCCTTCTGTTGATACTGAAGAGCTTCCAGACAGCTTGAATAGCATGTTTGAAAGCCCCCAATTCAAGGAGAATTTGAATTCATTTAAGCAGCTGCTCACTGAAGGAGTCTTCGATTTCTCCTTTCCGGGTGCTAAACGAGAAGACTGCAAGACGTTGAGTCGACTTGTGTTGTGGGATTTGTCTAAATCAAAATGGGTGGAACAATACGATCGACTTAAGAAATGTTCTACTAGCTTTGTGGATGACAAGAGATTGCTTGATGGTCAAAACAAAAAGTTTTCAGAAACAAGGATTACAATGACGAGTCCGAGAAGGGTGACGACGAAGACTAGCGTAGAAAGCAAGGAACTCGTTGACGACAGTTTTTGCTTTAGTCCAAGAAGTTTATTTGCTTTGCCATCTGATGGAAGTTCCTTCACATTGGAATCTCTACATTTTGATGAGGATAGTTTTGACCAGGATCTCTTGCTCGATGTGAGGTCGAACAGCTCGTTCCCACAAGCGGAACTCCTGAGTTTTGGTGGTGAACAAGCAAGCAATAGTAGTAGTTCGATAAATCTACGACTTATGCATCGTTGA 1533 44.55 MGKQGPCYHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGSLANYTPLHARADPDEYDDKRLSRLKNSSVYKNKEVKLLKRKHYQDHGVVVGVIPDHAQSFHKAVDEDTSNRSSSGSAISNSESCAQFGGADGSDLTGPSQSTAWESMVPSRKRTCVDRPKSTAVEKLTKDLYTILREQKSYFSGSSEEDLLFESETPMVSVEIGHGSILMRHPSSIAREEESEASSISIDHKHFSVNEAYSESSIVPSTLGIGRKHSNGQAFLQEQIKKDRPQSEKVQALGNHNSPLCNIDLTVILNFREFTKQLTCEDQRELMKYLPSVDTEELPDSLNSMFESPQFKENLNSFKQLLTEGVFDFSFPGAKREDCKTLSRLVLWDLSKSKWVEQYDRLKKCSTSFVDDKRLLDGQNKKFSETRITMTSPRRVTTKTSVESKELVDDSFCFSPRSLFALPSDGSSFTLESLHFDEDSFDQDLLLDVRSNSSFPQAELLSFGGEQASNSSSSINLRLMHR 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4586921 4592240 + CmoCh06G008350.1 Cmo06g00835 384397

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00835 510 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Cmo06g00835 510 CDD ZnF_GATA 6 51 IPR000679 GO:0006355|GO:0043565
Cmo06g00835 510 MobiDBLite consensus disorder prediction 103 158 - -
Cmo06g00835 510 Gene3D - 3 83 IPR013088 GO:0006355|GO:0008270
Cmo06g00835 510 Gene3D - 277 360 IPR038108 -
Cmo06g00835 510 Pfam Asx homology domain 273 366 IPR028020 -
Cmo06g00835 510 PANTHER GATA TRANSCRIPTION FACTOR 26 1 509 - -
Cmo06g00835 510 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 44 - -
Cmo06g00835 510 PANTHER OSJNBB0038F03.10 PROTEIN 1 509 IPR044589 -
Cmo06g00835 510 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Cmo06g00835 510 MobiDBLite consensus disorder prediction 110 149 - -
Cmo06g00835 510 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 284 393 IPR044867 -
Cmo06g00835 510 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00835 - - - csv:101205985 854.358
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00835 Cmo-Chr6:4586921 Cmo19g00407 Cmo-Chr19:4775225 0 dispersed
Cmo16g01159 Cmo-Chr16:8252858 Cmo06g00835 Cmo-Chr6:4586921 0 wgd
Cmo02g01613 Cmo-Chr2:9274355 Cmo06g00835 Cmo-Chr6:4586921 9.57E-160 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmo05g00609 CCT,CST,ECH 78 342 C2C2-Gata Transcription Factor Family AT5G25830 54.3 1.5e-63 240.7
Cmo16g00703 . 28 305 C2C2-Gata Transcription Factor Family AT5G66320 51.4 2.0e-63 240.4
Cmo03g00730 . 98 281 C2C2-Gata Transcription Factor Family AT5G66320 50.5 7.8e-44 175.3
Cmo09g00615 CCT,ECH 34 289 C2C2-Gata Transcription Factor Family AT4G32890 50.6 1.5e-54 210.7
Cmo06g00835 . 1 489 C2C2-Gata Transcription Factor Family AT4G17570 53.8 8.0e-133 471.5
Cmo16g01159 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 52.2 1.4e-132 470.7
Cmo19g00407 . 1 492 C2C2-Gata Transcription Factor Family AT4G17570 51.3 3.0e-127 453.0
Cmo02g01613 . 643 1070 C2C2-Gata Transcription Factor Family AT4G17570 51.5 1.1e-110 397.9
Cmo06g00835 . 1 490 C2C2-Gata Transcription Factor Family AT5G47140 50.4 2.2e-113 406.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001256 2 2 1 2 3 2 5 2 2 2 2 2 4 2 1 4 2 3 4 2 2 2 2 2 2 2 2 7 3 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9968 PF13919 ASXH 6.90E-08 No_clan Cmo TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g00835 Cmo_Chr06 FPKM 30.688511 33.907673 24.017216 25.025661 19.331526 19.605709 18.503906 10.631613 10.148221 9.74622