Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00844 ATGGGTCGTAAGCAAATCGACCAAGAAGCCTCTCGTTTAACCCTACCGATCCTAATTTTGGTTAGTTTCATCTCCTGCGCCGCCGTGTACACGTTTCTCCCTTTTTTGTTCAGACTCAACGGCGGCGATCCTTCCAAACTTGAATCGTTCGCAGTGATTAGAGATGGTGATGCCGGAAATTTGGAAGGTGGAGCCGAGGAATGTTGCCGGGGAATCGAGAATTTGGAGTATTGGGGTCCGGCTGTGAAGTGGGGTTCTGAATTTAAGTTCAATTCCTCTGAGCTGTGTTGTAAGGCTTGTAAAGCTATGTGCAACGGCAATGATGGGCCTTGCTTGTGTGATACTTGGGTTTATTGTGGAAATCGAAAGGAATGTGGTTCAAAATTTGGTGAATGTTGGCTGAAGAAACAGAAGGATACATTGGCCCCTGATCGGCAGGAAGGAGGGACAACAAGGAATCGTTGCGTTGGAGACCGACCATGGCACGCTTCATATCAAGGTAACCGTCCTTGCTTGTATGTGCTCTTAGTTACCTTCCTAACTCGTGTTCTTAGGGGTGAGGAGACTCGTGTTCGAAACTTTCGTCTGTTCGTATTCGTCGATTGCATGATTGAATTGTTGAATATCAGAATGTTCTTGACAATAGAAACTTCAAGATCTTACCCATATAACTGTTACATTTTTGTGCATTCTGAGATAGTGTTTTTGGTTATACCCTGTTTATGGACTCTGATAGCATTTAGAACGCTTCCCCCTGTCGTTTTCACGTGTCGTTATAATGCGAAAATTTGCCTCCTCTTCCCTGACTGTGCTCCCCATTCTGTTGCCTACATTCTTGAGTTGTTGGAATTACGACATTGCGCTGGTTGCCACTTCTACCGTGCCGAGGGTCGAGGCCAATCTTGGGACTCGAAAGGAAACCCCATAGAAAACGCTCCTTTAGGTCCTCCGTTTGCACTTATTCAAGGAACACTGGAAACCCAAGGGGAACCATTTAAGAAGATTTCCCCTGAAGTTTGCCCATACATAAAGCGCGGTTCGGTAGCGTGGGTTGGTTCGGGACCGGAATTCTTCATTAGTCTTGCAAACCACCAAGAATGGAATAAAGTGTACACGGTGTTCGGTTCGGTTCTCCCAGAAGACATGGAAGTTGCAGAGAAAATTGCTGGACTTCCTACCAAGCCCGATGTTTGGAACAATGTCAACGTTTCGGTGTTGCAAGAACACGTTCCGTTGCGGTTGAAACGAATGAAGAAGAGTCATGGAGATCTGAACATGAAATCAGATTGA 1290 45.81 MGRKQIDQEASRLTLPILILVSFISCAAVYTFLPFLFRLNGGDPSKLESFAVIRDGDAGNLEGGAEECCRGIENLEYWGPAVKWGSEFKFNSSELCCKACKAMCNGNDGPCLCDTWVYCGNRKECGSKFGECWLKKQKDTLAPDRQEGGTTRNRCVGDRPWHASYQGNRPCLYVLLVTFLTRVLRGEETRVRNFRLFVFVDCMIELLNIRMFLTIETSRSYPYNCYIFVHSEIVFLVIPCLWTLIAFRTLPPVVFTCRYNAKICLLFPDCAPHSVAYILELLELRHCAGCHFYRAEGRGQSWDSKGNPIENAPLGPPFALIQGTLETQGEPFKKISPEVCPYIKRGSVAWVGSGPEFFISLANHQEWNKVYTVFGSVLPEDMEVAEKIAGLPTKPDVWNNVNVSVLQEHVPLRLKRMKKSHGDLNMKSD 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4697035 4699467 - CmoCh06G008440.1 Cmo06g00844 384406

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00844 429 PANTHER EXPRESSED PROTEIN 1 149 - -
Cmo06g00844 429 PANTHER EXPRESSED PROTEIN 256 420 - -
Cmo06g00844 429 SUPERFAMILY Cyclophilin-like 265 405 IPR029000 -
Cmo06g00844 429 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASES 256 420 - -
Cmo06g00844 429 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 264 401 IPR002130 GO:0000413|GO:0003755
Cmo06g00844 429 Gene3D - 250 410 IPR029000 -
Cmo06g00844 429 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASES 1 149 - -
Cmo06g00844 429 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 26 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00844 - - - csv:101206948 307.375
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00844 Cmo-Chr6:4697035 Cmo14g01971 Cmo-Chr14:14530928 1.43E-40 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g548 . Blo03g00135 Bda06g01307 . Bpe05g00546 Bpe07g00199 . . Cmo06g00844 . . . . . Sed07g0533 . . Bhi11g00085 Tan01g2109 Cmetu06g1674 . Hepe06g1082 Mch10g1601 . Cla10g00208 Cam10g0216 Cec10g0221 Cco10g0221 . . Cre10g0470 . . Cone6ag0632 . Lsi07g01250 . . Cme06g02522 . . . . . . . Bma12g00189 . . . Cma06g00821 . . . . . . . . . . . . . . . . . . . . Csa03g00225 Chy06g02096 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002040 1 3 2 3 3 2 2 2 2 2 2 2 2 2 1 2 2 3 2 2 2 2 2 2 2 3 2 3 2 2 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g00844 Cmo_Chr06 FPKM 2.720354 2.470822 13.916553 13.812289 20.381935 18.801315 19.643631 17.322752 16.445145 16.768166