Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00858 ATGGTGGAACCGGTGGAGCTGCCGAGTCGACTCGGAATTCTTCCGTTCAGGAATAAGGTTCTTTTGCCCGGCGCCATCATTCGGATTCGATGCACTTCGTCCAGCAGTGTTAAACTGGTGGAGCAAGAGTTGTGGCAGCGAGAAGAGAAGGGGTTGATTGGTATTCTTCCAGTTCGAGATGATGCAGACGCATCAGCAATAGGGCCAGTGTTATCTCAAGGTGCGGGAAGCAATCCTGGAGATCGTAGCTCGAGGGCTCAATCTGGATCCTCTGACTCACAAAGAGTAGATGGGAAAAATCATCAGGAAGTAATTCAATGGCATTCAAGGGGTGTTGCTGCTCGTGCCTTGCAGCTGTCTAGAGGAGTAGAGAAACCAAGTGGAAAAGTGACATATACGGTTGTGCTAGAAGGTTTATGTAGATTTTCTGTCCAGGAACTTAGCACCAGAGGAACATATTATACTGCAAAAATATCACCCTCAGAAATGACAAAGGCAGAGATGGAGCAAGTGGAGCAAGACCCAGATTTTATTTCATTATCTCGACAATTCAAAGCTACTGCAATGGAGCTTATATCTGTTCTTGAACAGAAACAAAAAACTGAAGGAAGAACAAAAGTTCTTTTGGATACAGTTCCAGTTCATAAACTGGCTGATATATTTGTTGCCAGTTTTGAGATGAGTTTTGAAGAGCAATTATGCATGCTGGATTCGGTTGACTTAGGAGTAAGGCTTTCCAAAGCAATGGAGTTAGTTGACAGGCATTTACAGTCAATACGTGTAGCAGAGAAGATTACGCAGAAAGTAGAAGGACAATTATCAAAATCACAGAAAGAATTTCTCTTGCGTCAGCAGATGAGGGCAATAAAGGAGGAGCTTGGTGATGACGATGATGAAGATGATTTTGTTGCCCTGGAAAGAAAGATGCAAAGTGCTGAAATGCCTGCCAATATCTGGAAGCATGCTCAGAGGGAGTTGAGGAGCCTTAAAAAGATGCAACCTCAACAACCTGGGTACAACAGTTTGCGTGTTTACCTTGAGCTTCTAGCTGACCTTCCTTGGAAAAAGGAAACTGAAGAACTTGAATTAGACCTGAAAGCTGCAAAGGAACGTCTTGACAGTGACCACTATGGTTTGGTCAAGGTCAAGCAACGAATTATTGAATACCTTGCTGTTCGGAAGCTTAAGCCAGATGCAAGAGGGCCCGTGCTGTGCTTTGTTGGGCCACCAGGTGTGGGAAAGACATCTTTGGCATCATCTATTGCTGCTGCTCTGGGCAGAAAATTTGTACGCATATCCCTGGGTGGTGTTAAAGATGAGGCTGACATTAGGGGTCATAGGAGGACATACATTGGAAGCATGCCAGGGCGTCTTATTGATGGACTGAAGAGAGTAGCTGTTTGCAATCCAGTCATGCTATTAGATGAAATTGACAAGACAGGATCTGATGTGCGGGGAGATCCAGCTTCAGCTCTTCTGGAGGTTCTTGACCCTGAACAGAACAAAAAGTTCAGTGATCATTATTTGAATGTCCCATTTGACCTTTCAAATGTTGTATTTGTGGCCACTGCTAACAGAATGCAGCTCATACCTCCTCCTCTTCTAGATAGGATGGAAGTCATTGAGCTGCCTGGATACACACCAGAGGAAAAACTTAAGATTGCAATGTACCATTTGATTCCACGAGTTTTGGAACAGCATGGGCTAAGCGCTGAATATCTTCAAATTCCAGAGGCTATGGTTAAACTTCTGATTCAAAGATACACTAGAGAGGCTGGTGTACGAAACCTCGAGAGAAATTTGGCTTCCTTGGCTCGTGCTGCTGCTGTTAGAGTTGTGGAAAGGGATCGAACTGTCCCGTTGAGTAAAGATGTGCATCAAGTTTCTTCTCCTCTGTTGGAAAATAGATTTTCTGATGGAGGTGAAGTAGATATGGAGGTCATCCCAATTGGAGCAGATCACGAGATACCAAACCCATTGAGGATAGCCTCTCCATTAGTTGTTGATGAGGCTATGCTTGAAAAAGTGCTTGGGCCTCCTCGGTTTGAGGACAGAGAAGCAGCAGAGAGAGTTATAACACCTGGGATATCCGTTGGATTGGTTTGGACTGCCTTTGGGGGAGAGGTTCAGTTCGTGGAGGCTACAGTAATGTCAGGAAAGGGAGAATTACATCTCACTGGCCAGCTTGGTGATGTCATTAAAGAATCAGCTCAGATAGCCCTTACCTGGGTAAGAGCAAGGGCGACAGATCTGAAACTGGCAGCTGCTTGTGAGTCCAATCTTTTGGAGGGTCGTGATATTCATATACACTTTCCTGCTGGTGCGGTGCCCAAGGATGGGCCTTCAGCTGGTGTGACTCTTGTAACAGCTCTGGTCTCACTGTTTGGTCGGAAAAGAGTAAGAGCTGATACTGCAATGACAGGAGAGATGACTCTGAGGGGTCTTGTTCTACCTGTTGGTGGCATCAAGGATAAGATACTAGCTGCACATCGTTATGGGATAAAGAGGGTTATTCTACCAGAGAGGAATTTGAAAGATTTAGTGGAAGTTCCTTCAGGCGTGCTTGCTAGTTTGGAGATAATATTAGCCAAGCGGATGGAAGACGTACTGGAGCAGGCTTTTGAAGGTGGGTGTCCATGGAGACTACACTCGAATTGGTGCTGGTGCTGGCTAATCAAAATATGTGATGATTTCTCCATGTTCTGGTCAATTCTTCTGCAAGAAGGAAGTCACCCAATTTGCTGCCGAAAGTTGCAAGTCTTTGGATCCTGTAACCAAATGCATAAAAAACAATGGTATGTAATATTCTTTCATCTTATCAAATGCTCATCTACTGCGGTTGAGCCCCCAGTTATTGTCATTTTTATTCTCGTGCTTATTCGTCCTGTAATTATGAAAATGTCTCGTATTTATTATAGAAGCAAATTTTATCCCTCCCTCTATAGTGTTTTTAAGGAAAGTCTCAGTATGTGGCATGTGGTATTAGGTATAATTCAATCTAACAAGCCCGGAGATGTATACCATATAAAATACATCCATTCCTCTGGTAGTGGCAGTCACTCGGCAAAAGAAAAAGATATTAGTTACTTCCTATATAGTCTATAG 3105 43.93 MVEPVELPSRLGILPFRNKVLLPGAIIRIRCTSSSSVKLVEQELWQREEKGLIGILPVRDDADASAIGPVLSQGAGSNPGDRSSRAQSGSSDSQRVDGKNHQEVIQWHSRGVAARALQLSRGVEKPSGKVTYTVVLEGLCRFSVQELSTRGTYYTAKISPSEMTKAEMEQVEQDPDFISLSRQFKATAMELISVLEQKQKTEGRTKVLLDTVPVHKLADIFVASFEMSFEEQLCMLDSVDLGVRLSKAMELVDRHLQSIRVAEKITQKVEGQLSKSQKEFLLRQQMRAIKEELGDDDDEDDFVALERKMQSAEMPANIWKHAQRELRSLKKMQPQQPGYNSLRVYLELLADLPWKKETEELELDLKAAKERLDSDHYGLVKVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIAAALGRKFVRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVAVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKKFSDHYLNVPFDLSNVVFVATANRMQLIPPPLLDRMEVIELPGYTPEEKLKIAMYHLIPRVLEQHGLSAEYLQIPEAMVKLLIQRYTREAGVRNLERNLASLARAAAVRVVERDRTVPLSKDVHQVSSPLLENRFSDGGEVDMEVIPIGADHEIPNPLRIASPLVVDEAMLEKVLGPPRFEDREAAERVITPGISVGLVWTAFGGEVQFVEATVMSGKGELHLTGQLGDVIKESAQIALTWVRARATDLKLAAACESNLLEGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFGRKRVRADTAMTGEMTLRGLVLPVGGIKDKILAAHRYGIKRVILPERNLKDLVEVPSGVLASLEIILAKRMEDVLEQAFEGGCPWRLHSNWCWCWLIKICDDFSMFWSILLQEGSHPICCRKLQVFGSCNQMHKKQWYVIFFHLIKCSSTAVEPPVIVIFILVLIRPVIMKMSRIYYRSKFYPSLYSVFKESLSMWHVVLGIIQSNKPGDVYHIKYIHSSGSGSHSAKEKDISYFLYSL 1034
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4836106 4849874 + CmoCh06G008580.1 Cmo06g00858 384420

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00858 1034 SMART lon_5 10 254 IPR003111 -
Cmo06g00858 1034 ProSitePatterns ATP-dependent serine proteases, lon family, serine active site. 779 787 IPR008268 GO:0004176|GO:0004252|GO:0006508
Cmo06g00858 1034 Gene3D - 693 878 IPR014721 -
Cmo06g00858 1034 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 829 847 - -
Cmo06g00858 1034 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 694 710 - -
Cmo06g00858 1034 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 776 795 - -
Cmo06g00858 1034 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 408 427 - -
Cmo06g00858 1034 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 806 825 - -
Cmo06g00858 1034 SMART AAA_5 400 545 IPR003593 -
Cmo06g00858 1034 CDD AAA 385 546 - -
Cmo06g00858 1034 Pfam ATPase family associated with various cellular activities (AAA) 404 541 IPR003959 GO:0005524|GO:0016887
Cmo06g00858 1034 Gene3D - 3 160 IPR046336 -
Cmo06g00858 1034 PANTHER ATP DEPENDENT LON PROTEASE FAMILY MEMBER 1 885 IPR027065 GO:0004176|GO:0004252|GO:0005524|GO:0030163
Cmo06g00858 1034 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 352 616 IPR027417 -
Cmo06g00858 1034 Gene3D - 365 543 IPR027417 -
Cmo06g00858 1034 Hamap Lon protease homolog 2, peroxisomal [LONP2]. 3 886 IPR027501 GO:0004252|GO:0006515
Cmo06g00858 1034 MobiDBLite consensus disorder prediction 76 95 - -
Cmo06g00858 1034 MobiDBLite consensus disorder prediction 68 100 - -
Cmo06g00858 1034 Pfam ATP-dependent protease La (LON) substrate-binding domain 13 254 IPR003111 -
Cmo06g00858 1034 SUPERFAMILY PUA domain-like 11 253 IPR015947 -
Cmo06g00858 1034 Pfam Lon protease (S16) C-terminal proteolytic domain 668 875 IPR008269 GO:0004176|GO:0004252|GO:0006508
Cmo06g00858 1034 Gene3D - 167 297 - -
Cmo06g00858 1034 TIGRFAM lon: endopeptidase La 13 874 IPR004815 GO:0004176|GO:0005524|GO:0006508
Cmo06g00858 1034 ProSiteProfiles Lon N-terminal domain profile. 11 254 IPR003111 -
Cmo06g00858 1034 Gene3D - 544 638 - -
Cmo06g00858 1034 SUPERFAMILY Ribosomal protein S5 domain 2-like 694 873 IPR020568 -
Cmo06g00858 1034 ProSiteProfiles Lon proteolytic domain profile. 691 876 IPR008269 GO:0004176|GO:0004252|GO:0006508
Cmo06g00858 1034 Gene3D - 304 352 - -
Cmo06g00858 1034 PANTHER LON PROTEASE HOMOLOG 2, PEROXISOMAL 1 885 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00858 K01338 lon; ATP-dependent Lon protease [EC:3.4.21.53] - csv:101213865 1595.48
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cmo06g00858 Cmo16g01139 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g01039 Cmo-Chr12:9673498 Cmo06g00858 Cmo-Chr6:4836106 5.48E-145 transposed
Cmo16g01139 Cmo-Chr16:8105295 Cmo06g00858 Cmo-Chr6:4836106 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g584 Blo02g01005 . . . Bpe05g00540 . . . Cmo06g00858 Cmo16g01139 . . . . . Cpe14g00900 . Bhi11g00104 . . . . Mch10g1616 . Cla10g00192 Cam10g0198 Cec10g0204 Cco10g0205 Clacu10g0202 Cmu10g1046 Cre10g0452 . . Cone6ag0622 Cone9ag0625 Lsi07g01235 . . Cme06g02505 . . . . . . Bma05g00397 . . . . Cma06g00835 Cma16g01089 . Car16g01031 . . . . . . . . . . . . . . . . . Csa03g00209 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008731 0 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g00858 Cmo_Chr06 FPKM 7.773054 9.233967 15.178972 17.891476 63.674782 51.536446 63.60305 16.428066 15.788555 15.779921