Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00861 ATGTCTGAAAAATTGAAGTCTCTCAAGGAATATCTTAAGCGCTACGAAACTAACACTGATGAGGACAAGAAAAAGAAGAAGAAAAAAAAGAGGACAGCAACAGCAACCAAACCAAATGCTTTAGGTGTTCTAGTCGTGGATGAAGATCCTGTCTGGCAGAAACAAATAGTTATTGAAGAGGATAGTGCTCATAATTCAACTGATGAGGAACCCCAAGTTGATGAAGATATTGAGGTTAAGCGAATGAGGAGACTTGAAGAGGTAAAAGCCAAGCGCCCATATAATTCCATAAGTGAAGATGGAAGTGGTTGGGTTTCACTCCCTCCAAACCCTGCAAATTCTAACGTTGTGAGCTCTGATATATCTCCACCACGTAGAACTAGAGCTCGAAATGATACACCTTCTCCATCCCACGAGTTGAAGCCTCCTGGTGAAGAAGCTGAAGATATTTCACCTCCACGGAGGAGGCAGAGGAAACATCCTAGCTCACTTGAGCATGACGAAAAGGCCACAAGCTCTACTTATCCAAGTTCTGACTCATCTCCACCACGTAAGCAGAATGTTTATAGAGGCACACACTTACAAGGAGCTGACTCAGGACATTTGGATCATGCACAAGAAGATATTGATCTATCACCTCCACGACAGCGAAGGAAGCGGTACCATACTCCATCACCTGAATCTGATGGAAAACCTACACAACCATTTTCTCCACAATCTGATATGTCACCCCCTCGTAGAGTTGATAGGCAGGCATCTAAATCAAGTTTAGGGGTCAACCACAAGGCTGCGGGGTTATCTGACCTTTCTCCTCCTCGACGCAGAACTTCAAACTATGCCGAGGATGCTTATGTATCACGTGGATCGGATCTTTCACCTCCAAGGAAACAAAGGATAGATGTGAGGGGGGATCGATTACTTACAGAGAATAATTCACAAAATCATGTTGTTACTGATGCATCACAAGAATCACCACCAGATCTTTCTCCACAACGGAAAAAGCAAAAAGTGCCGCCTGTTTCAGTCTCCTTTAAACAGCCGCGCAAGACTGGTTTGCTTACTCAGCAAGAGTTTGGGGAAGAAATGTCTAAAACTAATAAAGAGGACTGGAGGAGGTTTAAGGAGATGAATCCTTCAGCAAGTAGTAATGCGGAGCCAATCTATCGTGACAAGATTAAAGGGGATCGCATTTCCAAAGAGGAATTCTTAAAATCACGAGGGAAAATAGAAGAAAAGCCAAAGGAGATAAAATTGGAATGGGGCAAGGGCTTGGCTCAAAAACGAGAAGCAGAAGCTGAACAAATGGAATTAGAACTTGAGAAGGATAGGCCGTTTGCACGGTCAAGGAATGATGCAGAGCTCGACTCAATGTTGAGAGAGAGACTGAGATGGGGTGATCCTATGGCACATTTGGTGAAGAAAAAGCAATCCGAAATGGCTCTTCCTGATCTAGGAGACAGCGAGAAGATGAAGGAATCAGGGTTCATTATTCCTCAGGACATTCCACCGCACAGCTGGCTAAAAAGAGGATTGGATGCAGCACCTAATCGATATGGTATAAGACCAGGAAGGCATTGGGATGGAGTCGATCGTAGTAACGGATTCGAGAAGCAAATGTTCAAAAAGATGAACGAGAAACGAGCTACGGAAAGGGAAGCATATCTTTGGTCTGTGTCTGATATGTAA 1686 43.83 MSEKLKSLKEYLKRYETNTDEDKKKKKKKKRTATATKPNALGVLVVDEDPVWQKQIVIEEDSAHNSTDEEPQVDEDIEVKRMRRLEEVKAKRPYNSISEDGSGWVSLPPNPANSNVVSSDISPPRRTRARNDTPSPSHELKPPGEEAEDISPPRRRQRKHPSSLEHDEKATSSTYPSSDSSPPRKQNVYRGTHLQGADSGHLDHAQEDIDLSPPRQRRKRYHTPSPESDGKPTQPFSPQSDMSPPRRVDRQASKSSLGVNHKAAGLSDLSPPRRRTSNYAEDAYVSRGSDLSPPRKQRIDVRGDRLLTENNSQNHVVTDASQESPPDLSPQRKKQKVPPVSVSFKQPRKTGLLTQQEFGEEMSKTNKEDWRRFKEMNPSASSNAEPIYRDKIKGDRISKEEFLKSRGKIEEKPKEIKLEWGKGLAQKREAEAEQMELELEKDRPFARSRNDAELDSMLRERLRWGDPMAHLVKKKQSEMALPDLGDSEKMKESGFIIPQDIPPHSWLKRGLDAAPNRYGIRPGRHWDGVDRSNGFEKQMFKKMNEKRATEREAYLWSVSDM 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4877976 4881728 - CmoCh06G008610.1 Cmo06g00861 384423

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00861 561 MobiDBLite consensus disorder prediction 14 40 - -
Cmo06g00861 561 MobiDBLite consensus disorder prediction 99 124 - -
Cmo06g00861 561 Pfam Pre-mRNA-splicing factor of RES complex 386 544 IPR018609 -
Cmo06g00861 561 MobiDBLite consensus disorder prediction 57 386 - -
Cmo06g00861 561 MobiDBLite consensus disorder prediction 227 260 - -
Cmo06g00861 561 MobiDBLite consensus disorder prediction 306 328 - -
Cmo06g00861 561 MobiDBLite consensus disorder prediction 168 188 - -
Cmo06g00861 561 PANTHER BUD13 HOMOLOG 6 561 - -
Cmo06g00861 561 MobiDBLite consensus disorder prediction 200 226 - -
Cmo06g00861 561 MobiDBLite consensus disorder prediction 361 375 - -
Cmo06g00861 561 MobiDBLite consensus disorder prediction 125 167 - -
Cmo06g00861 561 MobiDBLite consensus disorder prediction 61 94 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00861 K13106 BUD13, CWC26; pre-mRNA-splicing factor CWC26 - csv:101222994 894.419
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00861 Cmo-Chr6:4877976 Cmo20g00970 Cmo-Chr20:5388063 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g632 Blo02g01002 . . Bda08g00618 Bpe05g00538 . . . Cmo06g00861 . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0618 Cone9ag0620 . . . . . . . . . . . . . . . Cma06g00839 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004758 1 4 2 1 1 1 2 1 1 2 1 1 3 1 1 2 1 2 1 1 1 1 1 1 1 1 1 3 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g00861 Cmo_Chr06 FPKM 1.286061 1.072945 3.195356 3.283198 4.589897 4.742315 4.478348 3.378173 2.589501 2.670275