Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00870 ATGGCGGAGATTGTTGAGGTCCCCAATTTCAATCGGAACATTAGCGGAGGACCCAATTCGAGCATCACCTATGGCAATCCTCCGGAAAACACAATCGAGATCACCATTCGAACCATCGGCCCTGCGCGTCCCTCTCGCCTTCTCGTCCCTTCGCCGATCAAGGTGTGTGACTTGCGGAAATTGGTCGCGGAGCGTAGTCAATTACCCATTGGGAATTTGAAGCTTATTTTACGAGGAAAAATTTTGGACGACTGTAAAAATGACGATGATGTATTTGTGCGGCTCAATCATGGCGATTCATTGACTGTTGCTGTGAAGCCAAAGCCCCCAGCAGAACATCTTCGTGATGATTCTGATGATGATGAGGATGATCTGAAGTTTCGGCTTCCAGAGTCTTCAAGTCGGTTGAAGAAGAAAATTTACAATTTTCTGCGCGAGAAGTTGAAGTTTCCTGATATCCTTTTGATGGTGATTTTCTCTCTCAGTCTAAAGGCTTGGGCTGCTATACTTATCTGGTTTATCATGGCACCTGTTGCCCATAGCTGGGATCTTGGACCTTTATATATACTTGGCACTGGCTTTTGCATCATTCTACTAAATCTTGGACATCGGCGATCTGGGGAAATGAGTGCATATTCCATCTTCAACGAAGGTTTCAGAGAGCTTCCAGGGACCCTCAATGCAGACCGCCTCGATAGAGACGTTAGGCTGGGTCAGTTCTGA 723 46.47 MAEIVEVPNFNRNISGGPNSSITYGNPPENTIEITIRTIGPARPSRLLVPSPIKVCDLRKLVAERSQLPIGNLKLILRGKILDDCKNDDDVFVRLNHGDSLTVAVKPKPPAEHLRDDSDDDEDDLKFRLPESSSRLKKKIYNFLREKLKFPDILLMVIFSLSLKAWAAILIWFIMAPVAHSWDLGPLYILGTGFCIILLNLGHRRSGEMSAYSIFNEGFRELPGTLNADRLDRDVRLGQF 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4960566 4966137 + CmoCh06G008700.1 Cmo06g00870 384432

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00870 240 Gene3D - 23 119 - -
Cmo06g00870 240 SUPERFAMILY Ubiquitin-like 28 97 IPR029071 -
Cmo06g00870 240 ProSiteProfiles Ubiquitin domain profile. 32 84 IPR000626 GO:0005515
Cmo06g00870 240 Pfam Uncharacterized conserved domain (SAYSvFN) 169 234 IPR019387 -
Cmo06g00870 240 PANTHER UNCHARACTERIZED 33 240 IPR039159 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00870 - - - csv:101223066 424.476
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g654 . . . . . . . . Cmo06g00870 . . . . . . . . . . . . . . . . . . . . . . Cone8ag0617 . . . Lsi07g01219 . . . . . . . . . . . . . . Cma06g00845 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012359 2 2 1 1 1 1 1 1 0 2 0 1 1 1 1 1 1 1 0 1 1 1 1 0 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g00870 Cmo_Chr06 FPKM 10.514645 9.86653 11.308225 11.670797 0.615112 0.785221 0.241982 14.867158 17.349586 13.456571