Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00871 ATGGGAAGCGGAGTCTCCAGCCTCTTCTCGTGCCTCAAGCCGGAGACTCGCCCCGCCGCCCATCCCGCCGACAATCCCGACCTTCTCTTTTCCGCCTCCGACGCTCTCGACGAAACCCTAGGCCACTCCTTCTGCTACGTCCGCTCTTCCAACCGCTTCCTCTCTCCCTCTCATTCCGATCGCTTTCTTTCCCCCTCTCACTCCCTACGTTTTTCCCCTCCTCACGAACCGTCGCTGGGGGCTAGGACTAGAACTGCTCCGCCCGAGACTGCCTTCAAGGCCATCTCCGGTGCTTCTGTAAGTGCCAACAGTTCTATTCCCAGATCTGTTCTTATGCTCGATGCTGTTTACGACGATGCCACTGACACTGCGCTTGGGGCTTGCGGTGGTGGTTGTGGAGTCAGGGGGAGTATTTTGAATGGCTTTGAGAGCACTTCTTCTTTTACTGCTCTTCCGCTTCAGACGGTGCCCAGAGGTGGGACTGAGCCGTTGGAACGGGGTGGGTTCTTTCTATCTGGTCCAATTGAGCGTGGGGTGCTTTCTGGTCCTCTTGATGCGAATGTTGATGGCGCTGGTGCTGCTGCTGCTGGCTCTGGTGGGAGAGTTCATTTCTCCGCTCCGCTTGGTGGTATGTACATGAAGAAGAAGAGGAAGAAAAGCATTTCGGGGTTTAGGAAGGCATTTACGAGGAATTTTTCCGATAAGCGGCCGTGGGTGGTGCCAGTGTTGAATTTCGGTGCCCGGAAGGAGAGCTCGACAGCGGGAGATGAGCCGGAGGTGAGGAATGAGAGCGATGTTCAATGGGCACTTGGGAAGGCTGGGGAGGATCGTGTACATGTGGTTGTATCGGAGGAGCAAGGGTGGTTGTTTGTTGGGATTTATGATGGGTTTAATGGCCCTGATGCGCCGGAATTCTTGATGGGGAATCTCTATAGAGCAGTGTTCAATGAGCTTCAGGGATTGTTTTGGGAAATTGATGATAGTGAGGAGGCTGCTGCAAATGTGGTTGCAGAGAGTACAGTCAGTATGAACGAAACTAATGCTGACCCGTCTACGAGGGCCTCCAGTCAAACGATTGAAACTAATGGGATTGTTTCAGTAGTTGGAAATGAAGGGGAAGCGGAGCAACAGGTCCCTGATCGAGGATCAGTGAAGCGGGTTACGTTTCAATCCGTGGATGGATCGGAGCATAGGCGTAGGCGGCAGCTGTGGGAGTATTTAGCAGAGGACGATACACAGGATGGACTTGATCTTTCAGGTTCAGATAGATTTGCATTTTCAGTTGATGATGCGCTTAGTGTAAATAGTGCAGGTTCAGTAGCTGGTAGAAGGTGGCTGTTATTGTCCAAGTTAAAACAAGGTTTGTCAAAGCATAAAGAGGGTCATCATCATGCTAAGACTTTGTTCCCGTGGAAGTATGGTTTGGGAGATAAAGAGAAGGTTGAGGAGGCTGAGAATAGGGTGGAGGAGACATCTTATCGAAGTGGTAAAAGGAGAAAGGAAGGTTTAATCGATCATGAGTTGGTGTTGGGCGCATTGTCAAGGGCTCTTGAGATAACTGAATTAGCATATTTGGATATGACAGATAAGTTGCTCGATACGAATCCAGAGCTTGCTTTGATGGGTTCTTGCTTGTTGGTTGTGTTAATGAGGGATGAGGATGTGTATGTAATGAATGTGGGTGACAGCCGTGCCATTGTTGCACAGTATGAGCAACAAGAAGTTGGCCCAAATCAAGACTTGAAAGAGGAGGGCGACAAAAGAGCAGGCATGGAGGGTATAATTGAGGAGTCTGCAGATACGAGTGAAGGCAAAATAACTCGAACAAACCAACCTTCCTCTCAGACAGCGAGATTAACTGCATTGCAGCTATCCACCGATCATAGCACGAGCATTGAAGAGCTTTTTTCAAATTCATTTTTCTTTAGTTGGGGTCTTGTAGGCGTTGAAATTGTGTTATGGTTTCTTGGATTTATACGTGTGATCCTGGCCGTCCGAATGGAAGTTAAAAGAATAAAGAATGAGCACCCTGATGATAAACAATGCATTGTCAACGATAGAGTGAAGGGCCGTCTAAAGGTTACAAGGGCATTTGGTGCAGGGTTTTTGAAACAGCCAAAGTTGAACGATGCGTTATTGGAAATGTTTCGGAATGAGTATATTGGTACTGCACCATATTTATCATGCATGCCTTCTCTTCGTCACCATAGACTCTGCCCCACAGATCAATTCATCGTGCTCTCATCTGATGGATTGTATCAATATCTAACCAACGAAGAAGTGGTTTCTTATGTTGAGAACTTTATGGAGAAGTTTCCAGATGGAGACCCTGCACAGCACTTGATAGAGGAGCTTCTTTGCCGTGCTGCTAGAAAAGCAGTTCATCTAGTTAAAGGCATGCTTGGAAGTGATTTTAGAATAACCAAATTACTCGCCTGTGGCATTTTAAACAAGCTCACCCTTGTTCTGAAACTATTCTCTTTATTTAATCTTAAGGCTATATCTGATGCCTTTCTCAAGGTTGATTCTCATTCAGGATTGGTCTCTCAATGTCTATGCTTTGCAGGAATGGATTTTCACGAATTGTTGGACATCCCACAGGGGGATCGGAGGAAGTATCATGACGACGTTACTGTTATGGTCATTTCACTTGAAGGAAGAATCTGGAAATCCTCAGGAAAATACCTTTGA 2691 47.31 MGSGVSSLFSCLKPETRPAAHPADNPDLLFSASDALDETLGHSFCYVRSSNRFLSPSHSDRFLSPSHSLRFSPPHEPSLGARTRTAPPETAFKAISGASVSANSSIPRSVLMLDAVYDDATDTALGACGGGCGVRGSILNGFESTSSFTALPLQTVPRGGTEPLERGGFFLSGPIERGVLSGPLDANVDGAGAAAAGSGGRVHFSAPLGGMYMKKKRKKSISGFRKAFTRNFSDKRPWVVPVLNFGARKESSTAGDEPEVRNESDVQWALGKAGEDRVHVVVSEEQGWLFVGIYDGFNGPDAPEFLMGNLYRAVFNELQGLFWEIDDSEEAAANVVAESTVSMNETNADPSTRASSQTIETNGIVSVVGNEGEAEQQVPDRGSVKRVTFQSVDGSEHRRRRQLWEYLAEDDTQDGLDLSGSDRFAFSVDDALSVNSAGSVAGRRWLLLSKLKQGLSKHKEGHHHAKTLFPWKYGLGDKEKVEEAENRVEETSYRSGKRRKEGLIDHELVLGALSRALEITELAYLDMTDKLLDTNPELALMGSCLLVVLMRDEDVYVMNVGDSRAIVAQYEQQEVGPNQDLKEEGDKRAGMEGIIEESADTSEGKITRTNQPSSQTARLTALQLSTDHSTSIEELFSNSFFFSWGLVGVEIVLWFLGFIRVILAVRMEVKRIKNEHPDDKQCIVNDRVKGRLKVTRAFGAGFLKQPKLNDALLEMFRNEYIGTAPYLSCMPSLRHHRLCPTDQFIVLSSDGLYQYLTNEEVVSYVENFMEKFPDGDPAQHLIEELLCRAARKAVHLVKGMLGSDFRITKLLACGILNKLTLVLKLFSLFNLKAISDAFLKVDSHSGLVSQCLCFAGMDFHELLDIPQGDRRKYHDDVTVMVISLEGRIWKSSGKYL 896
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4968977 4973529 + CmoCh06G008710.1 Cmo06g00871 384433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00871 896 SMART PP2C_4 259 882 IPR001932 -
Cmo06g00871 896 CDD PP2Cc 474 791 IPR001932 -
Cmo06g00871 896 ProSiteProfiles PPM-type phosphatase domain profile. 259 884 IPR001932 -
Cmo06g00871 896 SUPERFAMILY PP2C-like 271 885 IPR036457 -
Cmo06g00871 896 MobiDBLite consensus disorder prediction 65 84 - -
Cmo06g00871 896 PANTHER PROTEIN PHOSPHATASE 2C 855 894 IPR015655 GO:0004722|GO:0006470
Cmo06g00871 896 PANTHER PROTEIN PHOSPHATASE 2C 21 634 IPR015655 GO:0004722|GO:0006470
Cmo06g00871 896 PANTHER PROTEIN PHOSPHATASE 2C 667 804 IPR015655 GO:0004722|GO:0006470
Cmo06g00871 896 PANTHER PROTEIN PHOSPHATASE 2C 29 855 894 - -
Cmo06g00871 896 PANTHER PROTEIN PHOSPHATASE 2C 29 21 634 - -
Cmo06g00871 896 PANTHER PROTEIN PHOSPHATASE 2C 29 667 804 - -
Cmo06g00871 896 Pfam Protein phosphatase 2C 667 788 IPR001932 -
Cmo06g00871 896 Pfam Protein phosphatase 2C 514 573 IPR001932 -
Cmo06g00871 896 Gene3D - 246 808 IPR036457 -
Cmo06g00871 896 Gene3D - 831 891 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00871 Cmo-Chr6:4968977 Cmo20g00446 Cmo-Chr20:2072912 1.02E-46 dispersed
Cmo16g01120 Cmo-Chr16:7922076 Cmo06g00871 Cmo-Chr6:4968977 1.82E-20 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00871 - - bhj:120092087 1295.03