Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00880 ATGATGCCTAGTGTAATGAAAGATTCATCAGAGAAGGACTCCGAGGCGTTTGTAGAAGTGAATCCAACCGGTCGATATGGGCGATACGGCGAGCTTCTCGGCTCAGGTGCGGTGAAGAAAGTATATAGAGGATTTGATCAAGAAGAAGGAATTGAGGTAGCTTGGAACCAAGTGAAACTAAGAAGCTTTTCAAATGATCCATCAATGATTGATAGGTTATACTCCGAAGTGACATTGTTAAGAACCTTAAAGAACAACAACATAATTGCCTTGTACGATGTATGGCTCGACAAAGCTCATGGAACACTAAATTTCATTACCGAGGTTTGTACAAGTGGGAACCTTAGAGAGTATAGGAAGAAGCACAGGCAAGTGTCTTTGAAGGCTTTGAAGAAATGGTCCAAGCAAATTCTCAAGGGTTTGCACTATTTGCATACTCGTGAGCCTTGTGTTATTCATAGGGACTTGAATTGTAGCAACCTCTTTGTCAATGGCAATGTCGGGCAGGTGAAAATTGGCGACTTGGGTTTGGCTGCAACGGTGAGAAAGAATCACTCAGCTCATTCAGTGCTTGGGACGCCAGAGTTCATGGCACCTGAGCTATATGAAGAGCATTACACGGAGCTTGTGGATATATATTCATTTGGGATGTGTTTGCTTGAATTGGTCACTTTGGAAATCCCTTATAGTGAATGTGACAATGTTGCCAAAATCTACAAGAAAGTGTCCTCCGGTATTAAGCCTCTGGCCCTTGCCAAGGTCAAGAACCATGAGGTCAAGGCTTTCATAGATAAGTGTCTTGCTCAATCTCAAGCTCGGCCCTCCGCTGCCGACCTCCTCCTCGACCCCTTCTTCAGAGAAATTAACGACGAACACGATGATGATTAG 888 43.92 MMPSVMKDSSEKDSEAFVEVNPTGRYGRYGELLGSGAVKKVYRGFDQEEGIEVAWNQVKLRSFSNDPSMIDRLYSEVTLLRTLKNNNIIALYDVWLDKAHGTLNFITEVCTSGNLREYRKKHRQVSLKALKKWSKQILKGLHYLHTREPCVIHRDLNCSNLFVNGNVGQVKIGDLGLAATVRKNHSAHSVLGTPEFMAPELYEEHYTELVDIYSFGMCLLELVTLEIPYSECDNVAKIYKKVSSGIKPLALAKVKNHEVKAFIDKCLAQSQARPSAADLLLDPFFREINDEHDDD 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5019086 5020420 - CmoCh06G008800.1 Cmo06g00880 384442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00880 295 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 2 294 - -
Cmo06g00880 295 Pfam Protein kinase domain 31 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g00880 295 Gene3D Transferase(Phosphotransferase) domain 1 110 291 - -
Cmo06g00880 295 PIRSF TyrPK_CSF1-R 26 131 - -
Cmo06g00880 295 PIRSF TyrPK_CSF1-R 121 281 - -
Cmo06g00880 295 SUPERFAMILY Protein kinase-like (PK-like) 29 291 IPR011009 -
Cmo06g00880 295 CDD STKc_WNK 25 285 - -
Cmo06g00880 295 PANTHER SERINE/THREONINE-KINASE WNK11-LIKE PROTEIN 2 294 - -
Cmo06g00880 295 Gene3D Phosphorylase Kinase; domain 1 10 108 - -
Cmo06g00880 295 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g00223 Cmo-Chr2:1026703 Cmo06g00880 Cmo-Chr6:5019086 3.71E-163 dispersed
Cmo06g00880 Cmo-Chr6:5019086 Cmo20g00670 Cmo-Chr20:3271666 5.21E-165 dispersed
Cmo06g00880 Cmo-Chr6:5019086 Cmo16g00981 Cmo-Chr16:6714689 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74416 PF00069 Pkinase 2.60E-50 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00880 K08867 - csv:101221172 536.954