Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00884 ATGGCAGCATTTCAACTCTCTAATCTATCAACTTCTTCAATTCCCCCTCAGTTCTATCACAAGCCATCCTGGATCTCTTCCTCTTCTAATTGCAACCGAAAATGTCCCTCTCGAAGACACCATGTTGGCTTTGTTAGCTGCTCATTTTCTCCTATGGAGTCCGCCAAGATTAAAGTAGTGGGAGTTGGTGGAGGCGGCAACAATGCCGTTAATCGCATGATTGGCAGCGGTTTGAAGGGTGTTGATTTCTATGCCATAAACACGGATTCTCAAGCCCTAGTACAGACTGCTGCTGAGAATCCACTTCAAATTGGAGAGCTTCTGACACGTGGTCTAGTGATGCCTATTGTGTCTTCGACTTTCGTTGATTTGTTTCTTGATAGAGATGCAGGTACTGGTGGGAATCCACTTTTAGGGGAACAAGCGGCGGAAGAATCAAAAGAAGCGATAGCTAGTGCTCTCAAGGGCTCTGATCTTGTGTTTATAACGGCCGGTATGGGTGGAGGCACTGGGTCTGGTGCGGCCCCAGTTGTTGCCCAGATTTCCAAGGAGGCAGGTTACCTGACTGTTGGTGTTGTTACTTATCCATTCAGTTTTGAAGGGAGAAAACGATCCTTGCAGGCGCTGGAGGCGATTGAAAAATTGCAGAAAAATGTTGACACTCTTATAGTAATCCCCAATGATCGCTTGCTTGATATTGCTGATGAACAGACACCCCTTCAAGATGCTTTTCTTCTTGCTGATGATGTTCTACGTCAAGGAGTACAAGGAATTTCTGATATAATTACGATTCCGGGGCTGGTCAATGTGGATTTTGCTGATGTGAAAGCTGTCATGAAAGACTCGGGAACTGCAATGCTCGGAGTTGGCGTTTCCTCCAGCAAAAATCGCGCAGAAGAGGCGGCTGAGCAAGCAACTTTGGCTCCCTTGATAGGATCATCCATTCAGTCAGCTACAGGAGTGGTATATAACATTACGGGGGGAAAGGACATAACTCTTCAGGAAGTGAACAGAGTCTCTCAGGTTGTGACAAGTTTGGCAGACCCATCAGCGAACATAATATTTGGGGCAGTTGTGGATGATAGGTACAGCGGAGAAATCCATGTAACCATAATTGCAACAGGGTTCTCTCAGTCCTTTCAGAAGATACTGTTAGCTGATCCCAGGGCTTCAAAACTTATTGATAAAGTGACTGGAGGAGATCAAGAAAAAAGCAGCAAGGCCTCGTCACCCCTCCGTCTCGACTTATCGCCTGCTGCTGCATCACCAACGCTTAATCGAGGTCGAAGGCTCTTCTTTTAG 1302 46.39 MAAFQLSNLSTSSIPPQFYHKPSWISSSSNCNRKCPSRRHHVGFVSCSFSPMESAKIKVVGVGGGGNNAVNRMIGSGLKGVDFYAINTDSQALVQTAAENPLQIGELLTRGLVMPIVSSTFVDLFLDRDAGTGGNPLLGEQAAEESKEAIASALKGSDLVFITAGMGGGTGSGAAPVVAQISKEAGYLTVGVVTYPFSFEGRKRSLQALEAIEKLQKNVDTLIVIPNDRLLDIADEQTPLQDAFLLADDVLRQGVQGISDIITIPGLVNVDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLIGSSIQSATGVVYNITGGKDITLQEVNRVSQVVTSLADPSANIIFGAVVDDRYSGEIHVTIIATGFSQSFQKILLADPRASKLIDKVTGGDQEKSSKASSPLRLDLSPAAASPTLNRGRRLFF 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5121072 5127820 + CmoCh06G008840.1 Cmo06g00884 384446

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00884 433 Gene3D Tubulin/FtsZ, GTPase domain 49 281 IPR036525 -
Cmo06g00884 433 Gene3D - 282 385 IPR037103 -
Cmo06g00884 433 PANTHER CELL DIVISION PROTEIN FTSZ-RELATED 39 433 IPR045061 GO:0003924|GO:0005525
Cmo06g00884 433 PANTHER CELL DIVISION PROTEIN FTSZ HOMOLOG 1, CHLOROPLASTIC 39 433 - -
Cmo06g00884 433 Hamap Cell division protein FtsZ [ftsZ]. 52 417 IPR000158 GO:0003924|GO:0005525
Cmo06g00884 433 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 167 173 IPR017975 GO:0005525|GO:0005874|GO:0007017
Cmo06g00884 433 CDD FtsZ_type1 72 375 IPR000158 GO:0003924|GO:0005525
Cmo06g00884 433 TIGRFAM ftsZ: cell division protein FtsZ 50 381 IPR000158 GO:0003924|GO:0005525
Cmo06g00884 433 PRINTS Cell division protein FtsZ signature 273 294 IPR003008 GO:0005525
Cmo06g00884 433 PRINTS Cell division protein FtsZ signature 187 208 IPR003008 GO:0005525
Cmo06g00884 433 PRINTS Cell division protein FtsZ signature 250 272 IPR003008 GO:0005525
Cmo06g00884 433 PRINTS Cell division protein FtsZ signature 159 179 IPR003008 GO:0005525
Cmo06g00884 433 SUPERFAMILY Tubulin C-terminal domain-like 268 382 IPR008280 -
Cmo06g00884 433 SMART Tubulin_C_4 268 385 IPR018316 -
Cmo06g00884 433 Pfam FtsZ family, C-terminal domain 283 376 IPR024757 -
Cmo06g00884 433 SUPERFAMILY Tubulin nucleotide-binding domain-like 56 266 IPR036525 -
Cmo06g00884 433 Pfam Tubulin/FtsZ family, GTPase domain 56 234 IPR003008 GO:0005525
Cmo06g00884 433 SMART Tubulin_4 56 266 IPR003008 GO:0005525
Cmo06g00884 433 ProSitePatterns FtsZ protein signature 2. 158 179 IPR020805 GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00884 K03531 ftsZ; cell division protein FtsZ - csv:101222908 663.685
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00884 Cmo-Chr6:5121072 Cmo07g00885 Cmo-Chr7:4188041 5.53E-108 dispersed
Cmo16g00958 Cmo-Chr16:6345638 Cmo06g00884 Cmo-Chr6:5121072 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g585 . . . . . . Bma10g00581 Bma13g01095 . Cmo06g00884 . . . . . . . . . . . . . . Cla10g00460 Cam10g0446 Cec10g0469 Cco10g0457 Clacu10g0467 Cmu10g1296 Cre10g0701 Cone6ag0040 Cone9ag0046 . . . Csa03g00458 . Cme06g02820 Blo07g00880 Blo10g00853 . Bda12g00939 . . . . . . . . . . . . . Bhi11g00549 . . . . Mch10g1390 . . . . . . . . Lsi05g00545 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006787 2 1 2 2 2 1 2 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g00884 Cmo_Chr06 FPKM 2.720758 2.941423 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0