Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00885 ATGAGCGTTGTTCCGAAGGAGACGATTGAAGTCGTTGCGCAGAGCATTGGGATTTCCAACCTATCCCCTGAGGTTGCTCTTGCGCTCACTCCAGATGTCGAGTACCGGGTCCGTGAAATCATGCAGGAGGCAGTTAAATGCATGCGTCATTCGAAGCGAACTGTTCTCACTTCCGTGGATGTTGACAACGCACTTAAATTAAGGAACTTAGAGCCAATATATGGTTTTGCTGCATGCGATACTTTGCGGTTCAAAAGGGCTGTTGGACACAAGGATCTCTTTTACATTGATGACAAGGATGTGGAGTTAAATAATGTTATTGAGGCACCTTTATCTAAAGCAACTGTTGAGACATCCGTTGTTGCTCACTGGCTGGCAGTTGAAGGTGTTCAGCCTGCAGTCGCAGAAAACTTGCCAACTGAAGAACCCCATGATGGAAAGAAATCTGACTTGAAGGAGGAAGACCTTCCTTATGACTCTAAAGCACCTACTAAGAATGTGATTTCGAGGGATCTCCAGCTTTACTTTGAGAAAATTACAGGCCTGACCTTGAACAAGTCTGGGTCTATTCCCTTTAGAGAAGCTTTAAGGAGCCTAGCAGTGGACTCAGGAATTCAACCTTTGGTTCCGTACTTTGCATGCTTCATCGCCGACGAGGTTTCAAAAAATTTAAGTAATTCTCAACTCTTGATTTCTTTGATGAGGATGATATGGTGCCTTCTTCAAAATCGGCAGATACATGTGGCACCTTATTTACACCAATTGATGCCATCCATCATTACCTGCCTTGTTGCAAAACAATTAGGTAAAAGATTTTCTGACAATCATTGGGAGCTTAGAGACTTAGCAGCAAGCCTGGTCTCTTTGATATGCAAAAGATTTGGACATGTTTATCACAATATTCAACCTCGTGTAACCAAGACTCTTCTCCATGTTTTCTTGGACCCCTCAAAATTATTACCTCAGCATTATGGTGCAGTTCAAGGGCTAGCAGATCTTGGACCCTCTGTGGTTCGCCAGTTTATACTACCAAATCTTGAGCCATATCTGCAATATCTAGAGATGGAGAAGCAAAAGAATGAAAGTAGGAGGCATGAAGCTTGGCTAGTTTATAGTGCCTTACTGCATGCAGCTGGTAAATGCATCCGTGGTTGGTTGAAAGTGTTTCCTCTTTCTATATCTCCACCAATACCTAGTACTTCGAAAATCAATGGGAAAGTCCTGATGAAAATCTCAAATAAACGCAGATCTAGTGCAGACAACTTGGGGCATCAACCAGCACTCAAAAAGATGGCGACAGATAGCACATTGGGTGCAATTCCTATGAACTCCATGATGGTCGATATTCAAGGGGCTACAAGCTCCATGCCACTTGGAGGTCCCAATGTAGGTGTGGCTCGAAAATTTCCAAATGAAATGAAGCCAGGGAGGGAAGGAGTTGGAGGTGAACAAGATGTCAAGGGTTCTTCTACTCTTGCTGTAGCATGGAAGGAGGATTTGGATGTTGGGCCGTTGCTGACTTCTCTTTTTCAACTCTTTGGTGAAGACCTGTTTTCGTTCATCCCAAAACCCGAGCTATCCTTCTTTCTGTGA 1593 43.69 MSVVPKETIEVVAQSIGISNLSPEVALALTPDVEYRVREIMQEAVKCMRHSKRTVLTSVDVDNALKLRNLEPIYGFAACDTLRFKRAVGHKDLFYIDDKDVELNNVIEAPLSKATVETSVVAHWLAVEGVQPAVAENLPTEEPHDGKKSDLKEEDLPYDSKAPTKNVISRDLQLYFEKITGLTLNKSGSIPFREALRSLAVDSGIQPLVPYFACFIADEVSKNLSNSQLLISLMRMIWCLLQNRQIHVAPYLHQLMPSIITCLVAKQLGKRFSDNHWELRDLAASLVSLICKRFGHVYHNIQPRVTKTLLHVFLDPSKLLPQHYGAVQGLADLGPSVVRQFILPNLEPYLQYLEMEKQKNESRRHEAWLVYSALLHAAGKCIRGWLKVFPLSISPPIPSTSKINGKVLMKISNKRRSSADNLGHQPALKKMATDSTLGAIPMNSMMVDIQGATSSMPLGGPNVGVARKFPNEMKPGREGVGGEQDVKGSSTLAVAWKEDLDVGPLLTSLFQLFGEDLFSFIPKPELSFFL 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5127883 5132486 - CmoCh06G008850.1 Cmo06g00885 384447

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00885 530 Pfam TAF6 C-terminal HEAT repeat domain 259 346 IPR011442 GO:0006367
Cmo06g00885 530 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 1 530 IPR037796 GO:0000124|GO:0005669|GO:0006367|GO:0016251|GO:0046695
Cmo06g00885 530 SMART TAF_cls 2 68 IPR004823 -
Cmo06g00885 530 Pfam TATA box binding protein associated factor (TAF) 1 66 IPR004823 -
Cmo06g00885 530 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 1 530 - -
Cmo06g00885 530 Gene3D - 164 365 IPR046344 GO:0006367
Cmo06g00885 530 SUPERFAMILY Histone-fold 3 76 IPR009072 GO:0046982
Cmo06g00885 530 MobiDBLite consensus disorder prediction 135 158 - -
Cmo06g00885 530 Gene3D Histone, subunit A 1 67 IPR009072 GO:0046982
Cmo06g00885 530 CDD TAF6C 165 377 IPR011442 GO:0006367
Cmo06g00885 530 SUPERFAMILY ARM repeat 202 383 IPR016024 -
Cmo06g00885 530 MobiDBLite consensus disorder prediction 140 158 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00885 K03131 TAF6; transcription initiation factor TFIID subunit 6 - csv:101204807 884.404
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00885 Cmo-Chr6:5127883 Cmo11g01867 Cmo-Chr11:12981093 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g584 . . . . Bpe09g00146 . . . . Cmo06g00885 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy06g01863 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011323 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 0 1 1 0 1 1 1 0 3 3 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cmo06g00885 Cmo_Chr06 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0