Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00908 ATGCAGGCGGATGAAAGCTGTGAGCTTTACAGATTCCTAGCCCAGAACAAAGGGTTCAGGCAGAGGGGCGGCTCCGGATCCTGCAGCTTTCCGGCGGCCCAAAGCTTGTCCACCTCATCCTCTTATTTCCCTTTGAATGAGTCGGCGGCGGCAGCCACCGAGACAGCGCTTCCGTCGCCCCATGACAGAGCCCTGGCGGCGCTGAAGAATCACAAGGAAGCTGAGAAGCGTAGGAGAGAGAGAATCAACTCTCATCTTGATAAGCTTCGGACTCTTCTTCCATGTAATTCCAAGAGATACAAGCAATGGCATAATGGGTACAAATTTGATCAGACCGACAAGGCATCGCTTTTGGCAAAAGTGGTAGAGCGAGTAAAAGAGCTGAAGCATCAGACCGCAGACATTGCGGAGCTGGAAACCTTCCCTTCCGAGAGCGACGAGATCAGCGTGCTCTCCGGCGAGGAATCGGACGACGGACGGCTCCTCTTCAAGGCCTCTCTTTGCTGCGAGGACAGGTCGGACCTCATCCCGGAGCTGAACGACATCCTGAATTCGCTGCAGCTGAAGACTGTGAGGGCCGACATCGTCACTGTGGGCGGCAGAATTCGCAATGTTCTTCTTATCGCCGCCAACCACCACCACAGCCTTGAGTCCCTCCACTTCCTTCAAAACGCTTTGAAATCTCTTCTTGAGCGTTCCAATTGTAGCGATAGATCCAAGAGGAGGCGTCTTGTAATTGCCCACAAATGA 750 53.6 MQADESCELYRFLAQNKGFRQRGGSGSCSFPAAQSLSTSSSYFPLNESAAAATETALPSPHDRALAALKNHKEAEKRRRERINSHLDKLRTLLPCNSKRYKQWHNGYKFDQTDKASLLAKVVERVKELKHQTADIAELETFPSESDEISVLSGEESDDGRLLFKASLCCEDRSDLIPELNDILNSLQLKTVRADIVTVGGRIRNVLLIAANHHHSLESLHFLQNALKSLLERSNCSDRSKRRRLVIAHK 249
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6296596 6297388 + CmoCh06G009080.1 Cmo06g00908 384470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00908 249 Pfam Helix-loop-helix DNA-binding domain 70 128 IPR011598 GO:0046983
Cmo06g00908 249 Gene3D - 63 136 IPR036638 GO:0046983
Cmo06g00908 249 PANTHER TRANSCRIPTION FACTOR BHLH106-RELATED 4 245 - -
Cmo06g00908 249 CDD bHLH_AtAIG1_like 62 150 - -
Cmo06g00908 249 PANTHER TRANSCRIPTION FACTOR BHLH30 4 245 IPR045847 GO:0003700|GO:0006355
Cmo06g00908 249 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 66 128 IPR011598 GO:0046983
Cmo06g00908 249 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 66 133 IPR036638 GO:0046983
Cmo06g00908 249 SMART finulus 72 134 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g03020 Cmo-Chr4:21205605 Cmo06g00908 Cmo-Chr6:6296596 9.84E-34 dispersed
Cmo06g00908 Cmo-Chr6:6296596 Cmo18g01065 Cmo-Chr18:11283669 6.05E-36 dispersed
Cmo06g00908 Cmo-Chr6:6296596 Cmo04g02109 Cmo-Chr4:13557420 1.52E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9974 PF00010 HLH 1.00E-10 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00908 - K22484 csv:101220675 328.561