Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00918 ATGGCACTGGTCTTGCACGCAGGAAAGACGAATAAAAATGGTTTCAAGGCTCTCATTGTTGCACAGTACAATGGAGTCGAAGTGAAATTGGTCCCGGACTTTGAGATGGGCGTTTCAAACAAAACTCCGGAGTTTGTCAAGATGAACCCTCTTGGGAAGGTGCCTGTTTTGGAAACGCCCGATGGCCCCATATTTGAGAGTAATGCGATAGCTCGCTATGTTGCACGCTTGAAGGCTGATACTACTCTGTGTGGTTCATCTGTTATTGAGTATGGGCATATTGAACAATGGATTGATTTTGCATCATTGGAGATAGATTCAAATATGGTGACTTGGTATAGGCCTAGAATGGGGAGAGCTCCTTATCTTCCTCCTGTCGAGGAAGCTGCAATTGCTGCATTGAAGAGGGCTTTGGGAGCTTTGAATACATACCTTGCTTCAAACACTTACCTAGTTGGTCATTCTATAACATTGGCTGATATCATCATGACTTGTAACCTGTTTATGGGTTTTACTAAGCTCATGACTAAGAGCTTTACCTCAGACTTCCCACACGTTGAGAGATACTTCTGGACCTTGGTCAATCAACCAAACATCAAAAGAATTCTGGGTGAGATCAAGCAGGCAGAGTCAATTCTACCTATTCAATCTACTAAGCAAACCCCCAAAGATGAGGTAAAGAAAGAACCCAAAAAGGAAGCTGCTAAAGAGAAGCCCAAGACTGTCGTTGGCGAGGGAGATGATGAAACACCAAAGCCAAAACCCAAGAATCCTCTTGATTTGCTTCCTCCCAGTAAGATGATTCTGGATGAGTGGAAGCGGTTATACTCAAATACCAAAACCAACTTCCGGGAGATCGCAATTAAAGGTACGAAACCTTTTCGGGCAGACAGAGGGGAACCTTGTTATTTGTTGAGTAATGGTTCAAATGGCATTGAAAGTGCATTCTTACCTAAGTTACTAGCACATGTTTTTATTTCTTCAAACAAACTTGATAATGTACCCAACAAAAATGCTCAACAAAAAATGCATTACCACTCTACTGATGTTCTCGATGAAGGATTTTGGGAGATGTATGATCCAGAGGGGTATTCTCTTTGGTTCTGTGATTATAAGTACAACGACGAAAATACTGTTTCGTTCGTAACGTTGAACAAGGTTGGCGGATTTCTCCAGCGAATGGATCTTGCTCGGAAGTATGCTTTTGGAAAGATGTTAGTGATTGGATCGGAGGCTCCATTTAAAGTGAAGGGGCTGTGGCTTTTCCGTGGACAAGAGATACCACAATTTGTGGTGGATGAGTGCTACGACATGGAGCTTTATGAATGGAGAAAGGTTGAGATATCAGATGAGGCGCAGAAGGAACGAGTCAACCAGATGATTGAAGATAAGGAGCCTTTTGAAGGAGAGGCTTTGTTGGATGCCAAATGCTTCAAGTGA 1440 42.71 MALVLHAGKTNKNGFKALIVAQYNGVEVKLVPDFEMGVSNKTPEFVKMNPLGKVPVLETPDGPIFESNAIARYVARLKADTTLCGSSVIEYGHIEQWIDFASLEIDSNMVTWYRPRMGRAPYLPPVEEAAIAALKRALGALNTYLASNTYLVGHSITLADIIMTCNLFMGFTKLMTKSFTSDFPHVERYFWTLVNQPNIKRILGEIKQAESILPIQSTKQTPKDEVKKEPKKEAAKEKPKTVVGEGDDETPKPKPKNPLDLLPPSKMILDEWKRLYSNTKTNFREIAIKGTKPFRADRGEPCYLLSNGSNGIESAFLPKLLAHVFISSNKLDNVPNKNAQQKMHYHSTDVLDEGFWEMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEAPFKVKGLWLFRGQEIPQFVVDECYDMELYEWRKVEISDEAQKERVNQMIEDKEPFEGEALLDAKCFK 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6516291 6519275 - CmoCh06G009180.1 Cmo06g00918 384480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00918 479 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 82 IPR004045 -
Cmo06g00918 479 SUPERFAMILY eEF1-gamma domain 342 479 IPR036433 GO:0003746|GO:0006414
Cmo06g00918 479 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 255 292 IPR036433 GO:0003746|GO:0006414
Cmo06g00918 479 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 326 479 IPR036433 GO:0003746|GO:0006414
Cmo06g00918 479 Pfam Glutathione S-transferase, N-terminal domain 10 76 IPR004045 -
Cmo06g00918 479 SFLD Main (cytGST) 4 190 - -
Cmo06g00918 479 CDD GST_C_EF1Bgamma_like 90 210 - -
Cmo06g00918 479 SUPERFAMILY Thioredoxin-like 2 83 IPR036249 -
Cmo06g00918 479 PANTHER - 1 291 - -
Cmo06g00918 479 PANTHER - 349 479 - -
Cmo06g00918 479 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 1 291 IPR044628 GO:0004364
Cmo06g00918 479 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 349 479 IPR044628 GO:0004364
Cmo06g00918 479 SUPERFAMILY GST C-terminal domain-like 73 212 IPR036282 -
Cmo06g00918 479 SMART EF1G_2 254 426 IPR001662 GO:0003746|GO:0006414
Cmo06g00918 479 Pfam Glutathione S-transferase, C-terminal domain 128 197 IPR004046 -
Cmo06g00918 479 Gene3D - 80 217 - -
Cmo06g00918 479 MobiDBLite consensus disorder prediction 221 255 - -
Cmo06g00918 479 MobiDBLite consensus disorder prediction 214 261 - -
Cmo06g00918 479 CDD GST_N_EF1Bgamma 3 77 - -
Cmo06g00918 479 Pfam Elongation factor 1 gamma, conserved domain 254 282 IPR001662 GO:0003746|GO:0006414
Cmo06g00918 479 Pfam Elongation factor 1 gamma, conserved domain 342 426 IPR001662 GO:0003746|GO:0006414
Cmo06g00918 479 Gene3D Glutaredoxin 1 74 - -
Cmo06g00918 479 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 87 215 IPR010987 -
Cmo06g00918 479 SUPERFAMILY eEF1-gamma domain 255 282 IPR036433 GO:0003746|GO:0006414
Cmo06g00918 479 SFLD Glutathione Transferase (cytosolic) 4 190 IPR040079 -
Cmo06g00918 479 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 255 479 IPR001662 GO:0003746|GO:0006414
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00918 Cmo-Chr6:6516291 Cmo04g02055 Cmo-Chr4:11482638 1.67E-78 dispersed
Cmo06g00918 Cmo-Chr6:6516291 Cmo16g00830 Cmo-Chr16:4362850 1.82E-82 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00918 K03233 - rcu:8263260 439.113