Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00920 ATGGGCTGCATTTGCTCTAAAGGAATTCCGTCAGACGACTATGTTGCTGAGAATCATTCCAAAGAAAGACATTTGAAGTCTAATAGATCTTCCAGGCATCCAGGGGCTTCATTGAGGAAAGAAGAACCGGTGTTGCATGCTGATGGAGGGCAAAGTGATGCAATGGCGCGATTGATAACAAACCATCATGATGAAGAAGATGCTGGATCAACATCTGAATCGGATGATGTTGAGAAGGCAGCACCCATTGAGAAAGCTGCCACTGCCAAGTCACTGCGTCAAGAACGACCAACTATGGAAGATGGAGGAAAGAGAGTAGGAGTACATAATAGTAATGCAACACCTAGAATAAACAATGTTGTTAATGGGGAAAAGGGGGCTTTGGTTATTGCTGGATGGCCTTCTTGGCTGGCATCTGTGGCTGGAGAAGCAATCAATGGATGGGTTCCTAGAAAGGCAGACTCTTTTCAGAAGTTGGATAAGATTGGACAAGGAACATACAGCAGCGTGTACAGGGCCCGCGATATTGAAACAAACAAAGTTGTTGCGTTGAAGAAGGTGCGATTTGCTAATATGGATCCTGAAAGTGTTCGTTTCATGGCCAGGGAAATCCTCATCCTGCGAAGGCTTGACCACCCCAATGTTATGAAGCTTGAAGGTCTTATTACTTCAAGGGTTTCTGGCAGTCTATACTTAATATTTGAGTACATGGAACATGATCTTGCAGGGTTGGCAGCAACCCCAGGGATCAAGTTCACTGAATCGCAGATAAAATGCTATATGCAACAGCTGCTTTGTGGCCTTAAACATTGCCATTCCCAGGGAATTTTGCACCGTGACATCAAGGGATCGAATCTTCTGATTGATAATAATGGTACTCTAAAGATAGGTGATTTTGGTCTATCAACCTTTTTCCGTTCCCGACAAAAGCAGCCCCTTACAAGTCGCGTGGTAACGTTGTGGTATCGACCGCCTGAGCTTTTGCTTGGTGCAACGGACTATGGAGTTTCTGTAGATTTGTGGAGTACTGGTTGCATTCTTGCAGAACTGTATGCTGGGAAGCCTATCATGCCTGGAAGAACAGAGGTGGAGCAACTACATAAGATCTTCAAACTTTGTGGCTCCCCTTCTGAAGAGTACTGGAAAAAATCAAAATTACCTCATGCCACCATCTTTAAACCTCAACATCCTTACAAGCGATGTTTTGCTGAGACATTCAAAGACTTCCCTTCCTCTGCATTGGCCCTTTTAGATATACTTCTTGCGGTTGAACCCGATGGTCGTGGAACAGCTTCCTCTGCCCTTCAAAGCGAGTTCTTTACTACAAAACCGCTTCCATCGGAGCCCTCTACTTTACCAAAGTACCCACCAAGCAAGGAGTTTGATGTTAAGCTTCGTGATGAGGAAAACCGAAGAAGAAGAGCTCCTATCAGTACAGCACGTGAACATGAAGCAGCCCGAAAGTTTCCGAAAGAACCTAAAGCTATTCCTGCACCAGATGCAAATGCTGAATTGCAGACATCCATACAGAAGAAACTAAGGCAGCAGAATCCTTCAAGTGTCAGTGAAAAGTATAATCCTGAAGAGGACGGAGGTTCTGGCTTTTGCATTGATCCCCCTAAAGAATCAACACAAACTCAACCTAATGCTTCGAGTTCTTCACGAAACATGAACAGGAGTCGGGGTGATACTCCAGGAGGTTTTTCAGTCGGGGAAAAGGGCGCAGAACTTAGAAAACAAAGATCTTATATGCACCATGGTTCTGGACAGTTATCCCGGTATTCCAATTCCGTTGCAGGTCAAGGCAGTTTGCAATTCGGCTGTGGTGGAGAAAGTAGTAGTAATTCACGTTGGCCAGAAGAGTGTTTTAATGTGTCATATAACCATATCAATGGTGGCGAATCTTCAGAAAAGCATGAATGGTCTCACCATTTACTAGAAAGTCCGAAGTCTTCTTATAAGATAGATGATCAGTCATCTGGAAAAGAGTCTGCTATGAATTACGCCCCGAAAAAGAGAATTCATTATTCAGGACCCTTGATGCCTCCTGGTGGAAACCTTGAGGAAATGTTAAAAGAGCACGAGAAACAAATCCAGCATGCAGTACGTAAGGCTCGTATAGACAAAGCGAAGACAAGAAAGACATACGATGACAAAAGTCTATCGGAGTCGTTGCTTCACCATGTGAGAAACGGCAATTGA 2202 44.19 MGCICSKGIPSDDYVAENHSKERHLKSNRSSRHPGASLRKEEPVLHADGGQSDAMARLITNHHDEEDAGSTSESDDVEKAAPIEKAATAKSLRQERPTMEDGGKRVGVHNSNATPRINNVVNGEKGALVIAGWPSWLASVAGEAINGWVPRKADSFQKLDKIGQGTYSSVYRARDIETNKVVALKKVRFANMDPESVRFMAREILILRRLDHPNVMKLEGLITSRVSGSLYLIFEYMEHDLAGLAATPGIKFTESQIKCYMQQLLCGLKHCHSQGILHRDIKGSNLLIDNNGTLKIGDFGLSTFFRSRQKQPLTSRVVTLWYRPPELLLGATDYGVSVDLWSTGCILAELYAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQHPYKRCFAETFKDFPSSALALLDILLAVEPDGRGTASSALQSEFFTTKPLPSEPSTLPKYPPSKEFDVKLRDEENRRRRAPISTAREHEAARKFPKEPKAIPAPDANAELQTSIQKKLRQQNPSSVSEKYNPEEDGGSGFCIDPPKESTQTQPNASSSSRNMNRSRGDTPGGFSVGEKGAELRKQRSYMHHGSGQLSRYSNSVAGQGSLQFGCGGESSSNSRWPEECFNVSYNHINGGESSEKHEWSHHLLESPKSSYKIDDQSSGKESAMNYAPKKRIHYSGPLMPPGGNLEEMLKEHEKQIQHAVRKARIDKAKTRKTYDDKSLSESLLHHVRNGN 733
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6618306 6629205 - CmoCh06G009200.1 Cmo06g00920 384482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00920 733 Pfam Protein kinase domain 156 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g00920 733 SUPERFAMILY Protein kinase-like (PK-like) 150 446 IPR011009 -
Cmo06g00920 733 SMART serkin_6 156 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo06g00920 733 Coils Coil 684 704 - -
Cmo06g00920 733 MobiDBLite consensus disorder prediction 440 571 - -
Cmo06g00920 733 Gene3D Transferase(Phosphotransferase) domain 1 239 480 - -
Cmo06g00920 733 MobiDBLite consensus disorder prediction 539 563 - -
Cmo06g00920 733 ProSitePatterns Serine/Threonine protein kinases active-site signature. 276 288 IPR008271 GO:0004672|GO:0006468
Cmo06g00920 733 CDD STKc_CDK9_like 156 440 - -
Cmo06g00920 733 ProSitePatterns Protein kinases ATP-binding region signature. 162 185 IPR017441 GO:0005524
Cmo06g00920 733 MobiDBLite consensus disorder prediction 703 733 - -
Cmo06g00920 733 PANTHER CELL DIVISION PROTEIN KINASE 103 709 - -
Cmo06g00920 733 MobiDBLite consensus disorder prediction 1 111 - -
Cmo06g00920 733 MobiDBLite consensus disorder prediction 58 103 - -
Cmo06g00920 733 MobiDBLite consensus disorder prediction 703 725 - -
Cmo06g00920 733 PANTHER KINASE CDK9, PUTATIVE-RELATED 103 709 - -
Cmo06g00920 733 MobiDBLite consensus disorder prediction 459 494 - -
Cmo06g00920 733 Gene3D Phosphorylase Kinase; domain 1 143 238 - -
Cmo06g00920 733 MobiDBLite consensus disorder prediction 503 526 - -
Cmo06g00920 733 ProSiteProfiles Protein kinase domain profile. 156 440 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g00920 Cmo09g00951 CCT
Cmo01g01183 Cmo06g00920 CCT
Cmo06g00920 Cmo09g00951 ECH
Cmo01g01183 Cmo06g00920 ECH
Cmo06g00920 Cmo16g00894 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02055 Cmo-Chr4:11482638 Cmo06g00920 Cmo-Chr6:6618306 0 dispersed
Cmo06g00920 Cmo-Chr6:6618306 Cmo16g00430 Cmo-Chr16:2044031 0 dispersed
Cmo06g00920 Cmo-Chr6:6618306 Cmo04g00583 Cmo-Chr4:2911153 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
74419 PF00069 Pkinase 7.50E-68 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00920 - - csv:101214435 1266.14