Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00924 ATGGCTTCCTCGTCATCTGATCCTGCCTTCAAACACGAACCCGGTGCTTCTTGCGCTGCTGCTTCTGCTGGAGGAACGCCGGAGTCTTCCGAGGTTGTAATGGCGAACGATCAGCTTTTACTGTACAGAGGATTGAAGAAAGCCAAGAAAGAACGAGGTTGCACTGCCAAAGAGCGCATCAGTAAAATGCCTCCATGTGCTGCTGGGAAAAGGAGTTCCATATACCGCGGACTTATAAATTCTCCAAAATTAGAGAACCAGAAGAGTGTTGAATTCTTGCTCACTGCCCGGATTGTGTTTACCACTCGATACCAAAAGAGCGTCTATGAATGGTTTGATGATATTAGACATAGATGGACTGGTCGTTATGAAGCTCATCTTTGGGATAAAAGTACCTGGAACCAGAACCAGAACAAGAAGGGAAAGCAAGGAGCATATGATGAAGAAGAGGCAGCTGCTAGGGCATACGATTTGGCAGCCTTAAAATATTGGGGTCCTGGGACTCTTATTAATTTTCCAGTGACTGATTATACTAGGGACCTTGAAGAAATGCAGATTGTTTCAAGAGAGGAATATCTTGCGTCTCTAAGAAGAAAGAGCAGTGGATTCTCCCGGGGAATATCATCGTGGTCTCTCGAGCGTCAACTTCTTCTGGGTCCTCTTGGGGTGGATGAAGGTTTAGAGTCAGACATTCCGTTCGGTCGTATGCCAGGCCCGGATTTTGTCAACAGCATAATTTATGGTGCCGGGGATGATCAAGCAACAGTAAGCGAATTCATCCACAACTTCTGCATTGAAAGGAAGATCGACTTAACAAGTTACATTAAGTGGAGGGGGCCAAACAAAAATCGAACGTCCAGTGTTGGATCGAAGTTGTCAGAAGAAGACAAGCATAGTAGCGTTGGAGAAGTTGACAGTGAACTCAAGGCTCTTGGACAGACCACCTGTCCCACAGAGCCATATGAGATGCCCTGTTTGGGTACATTACATAGGGTAAAGAAGGTTGCCTCGAAGGTCTCTGCTTTAAGTATTTTGTCACGGTCAGCAGCCTACAAGAGTTTGCAGCAGAGAGCTTTGAAATTAGAGGAAATTAACAATGAGAATGATGAGAACGAAAATAAAAACACTGTCAACAAGATAGATCATGGGAAAGCTGTTGAAACACATGCAAGTCATGGAGGTGATCCCAGTGAGGAGAAATATGGGGTTGCTTTTGGAGCAAGTGGTGGATTGCCACTTCAGAGAAACATGTTCCCCTTGACTCCATTCTTAACTGCACCTCTTCTTAGCAGTTACAACACTGTTGATCCCTTGGGAGATCCGATTCATTGGACATCTCTCGTTTCTGTTCTTCCTACTGGACTTTCTCGTACTGCCGAGGTTACAAAGACTGAAACCTCTTCAACTTACACTTTGTTTCGGCCGGAGGAATAA 1434 45.12 MASSSSDPAFKHEPGASCAAASAGGTPESSEVVMANDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGLINSPKLENQKSVEFLLTARIVFTTRYQKSVYEWFDDIRHRWTGRYEAHLWDKSTWNQNQNKKGKQGAYDEEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQIVSREEYLASLRRKSSGFSRGISSWSLERQLLLGPLGVDEGLESDIPFGRMPGPDFVNSIIYGAGDDQATVSEFIHNFCIERKIDLTSYIKWRGPNKNRTSSVGSKLSEEDKHSSVGEVDSELKALGQTTCPTEPYEMPCLGTLHRVKKVASKVSALSILSRSAAYKSLQQRALKLEEINNENDENENKNTVNKIDHGKAVETHASHGGDPSEEKYGVAFGASGGLPLQRNMFPLTPFLTAPLLSSYNTVDPLGDPIHWTSLVSVLPTGLSRTAEVTKTETSSTYTLFRPEE 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6686532 6691772 - CmoCh06G009240.1 Cmo06g00924 384486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00924 477 Pfam AP2 domain 116 165 IPR001471 GO:0003700|GO:0006355
Cmo06g00924 477 Gene3D AP2/ERF domain 112 175 IPR036955 GO:0003700|GO:0006355
Cmo06g00924 477 PANTHER BNAA03G19580D PROTEIN 114 475 - -
Cmo06g00924 477 PANTHER BNAA03G19580D PROTEIN 21 79 - -
Cmo06g00924 477 MobiDBLite consensus disorder prediction 289 304 - -
Cmo06g00924 477 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 21 79 - -
Cmo06g00924 477 MobiDBLite consensus disorder prediction 282 306 - -
Cmo06g00924 477 ProSiteProfiles AP2/ERF domain profile. 104 173 IPR001471 GO:0003700|GO:0006355
Cmo06g00924 477 SUPERFAMILY DNA-binding domain 116 174 IPR016177 GO:0003677
Cmo06g00924 477 Coils Coil 351 379 - -
Cmo06g00924 477 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 114 475 - -
Cmo06g00924 477 SMART rav1_2 116 179 IPR001471 GO:0003700|GO:0006355
Cmo06g00924 477 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00924 Cmo-Chr6:6686532 Cmo04g01529 Cmo-Chr4:7814003 1.06E-44 dispersed
Cmo14g00544 Cmo-Chr14:2761822 Cmo06g00924 Cmo-Chr6:6686532 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9976 PF00847 AP2 1.50E-05 CL0081 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00924 K09285 - csv:101206434 651.744