Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00951 ATGGAAGAAGAGTTTTCAAAACAAAAGCTAGAACTCGACGGTTACAATGATAACGGAGATTCTAAGTTATCTTGGTGGAAAAGGAAACTAACACTACTCAGTCTCGATTCATCAACTAGAAATGGTGAGAGATCGAGAGATGCAGAGAAGAACAATAGCGCAAACTTCAGATCTCTAAGTCAAATTGTCATTCATCCTCACGACTGGCGATACGTTCTTTGGACGCATTTCATTTTGGTATGGGCTGTGTACTCTTCCTTCTTTACGCCATTGGAATTCGGATTCTTCAGGGGTCTCCCCAAGAATCTCTTCCTCCTCGACGTTGCCGGCCAGATCGCCTTTCTCATCGATATCGCTGTTCACTTTTGTGTTGCCTATCGCGATTCCCATTCTTACCGCTTTGTCTACGACCGTAATCTCATCGCTATCAGATATTTGAAGTCTCGATTTGTGGTTGACTTAATGGGTTGTATGCCCTGGGACGCCATCTACAAGGCTTCTGGTAAGAAGGAGCTTGTGAGATATTTACTATGGATTCGGCTAAGTCGAGCCTTAAGAGTTACTGAATTCTTTGAGAAATTGGAGAAGGATATACGAATAAATTACCTTGGTACAAGAATTGCGAAGCTTTTTGTTGTGGAGCTTTATTGTACTCATACAGCTGCCTGTATTTTCTACTATCTTGCTACTACTCTACCTCCGTCAAAAGAAGGGTACACCTGGATAGGAAGCCTAAAGTTGGGGGACTATAGCTATTCAAACTTTAGAGAAATTGATCTTTGGAAGCGTTACATCACATCATTATATTTTGCTGTTGTAACTATGGCAACTGTTGGTTATGGTGACATGCATGCCGTCAATGTCAGGGAAATGATTTTTATCATGATTTTTATCTCCTTTGATATGATTCTTGGTTCTTATTTGCTTGGTAACATGGCAGCATTGATAGTAAAAGGATCAAAAACAGAAAAGTTTAGAGATAAAATGAAGGACGTTATTAAATACGTGAATAAAAATAAGCTCAATAGGAAATTAAGTAAAGACATCAAAGATCATCTTCAATTACAGTACTGCCACTCCTCTGAGTTTGGTGTTCTTCAAGATATTCCAGCTTCAATTCGTGCCAAGATATCACAGAAATTGTACGAGCCATACATTAAGGAAGTCTCTCTTTTCAAAGGTTGCTCTCAGGGATTCATAAAACGAATTGCAACCAAAGTTCGTGAAGAGGCTTTTTTCCCTGGACAAATGATTATTGAACGTGAAAACTTAGTTGACCAACTCTATGTTGTATGTCATGGTGAATTGGAGGAAGTTGAAAACTGGGATACTGAAGATGAAGAGTTAATTAGGTGTCTTGGAACATATAGCTCATTTGGCGAAATTTCTTTCCTTTGCAATTCTCCTCATCCTTACCATGTTCGGGTTCGTGAGTTTTCCAAGATCTTGCAACTCGATAAACTATCATTTAAAGAAACCTTGGAATTACACTTTTTAGATGGACAGATCATCTTAGACAATGCCCTTGAGGGAAAGGATTCCAACCAACAAGATCAAATTTTGGAATCTGACATAATTCTTTACATTCAAAAGCGTGAACTTGAGTTAGCCATTAAGGTCAACTGTGCTGCTCATGATGGGGATCTAAATCAACTCAAACGGTTGATTAAAGCAGGAGCAGATCCCAATAAAACAGATTATGATGGAAGATCGCCTCTGCATTTTGCTGCATCGAAAGGATATGAAGCTATTGCTTGTTTTCTTATTGAACAAGGAGCACAAGTTAATGTTCCAGATAAGTTTGGGAACATGCCTTTACTTGAAGCCATTCAGAATGGACATGAGCAAGTAGCTTCTTTACTTGCCAAAGCTGGAGCAACCATTGTTGCTAATGATGCTGGTGGACTTCTTTGTTCTACTGTCGCAAGAAGGGATTTGGGCTTTCTGAAAGGGCTTCTGGCTAATGGCATTGATCCAAATGCTAGAAACTATGATCAACGGACTCCACTTCACATAGCTGTCTCAGAAGGTTTGTATCCTTTTGCAGAGGTCCTATTAAATGCTGGAGCCAGTGTTTTTGCAACGGACAGATGGGGAAATACTCCGCTTGATGAAGCTCGTACCAGAGGAAATAAGAATTTGATCAGGCTACTTGAAGTTGCAAAAATTTTTCAGTCATCTGGAAACAACTCTGATATATCCGAAGAGATTGAAGGTACTAGTTGA 2226 39.53 MEEEFSKQKLELDGYNDNGDSKLSWWKRKLTLLSLDSSTRNGERSRDAEKNNSANFRSLSQIVIHPHDWRYVLWTHFILVWAVYSSFFTPLEFGFFRGLPKNLFLLDVAGQIAFLIDIAVHFCVAYRDSHSYRFVYDRNLIAIRYLKSRFVVDLMGCMPWDAIYKASGKKELVRYLLWIRLSRALRVTEFFEKLEKDIRINYLGTRIAKLFVVELYCTHTAACIFYYLATTLPPSKEGYTWIGSLKLGDYSYSNFREIDLWKRYITSLYFAVVTMATVGYGDMHAVNVREMIFIMIFISFDMILGSYLLGNMAALIVKGSKTEKFRDKMKDVIKYVNKNKLNRKLSKDIKDHLQLQYCHSSEFGVLQDIPASIRAKISQKLYEPYIKEVSLFKGCSQGFIKRIATKVREEAFFPGQMIIERENLVDQLYVVCHGELEEVENWDTEDEELIRCLGTYSSFGEISFLCNSPHPYHVRVREFSKILQLDKLSFKETLELHFLDGQIILDNALEGKDSNQQDQILESDIILYIQKRELELAIKVNCAAHDGDLNQLKRLIKAGADPNKTDYDGRSPLHFAASKGYEAIACFLIEQGAQVNVPDKFGNMPLLEAIQNGHEQVASLLAKAGATIVANDAGGLLCSTVARRDLGFLKGLLANGIDPNARNYDQRTPLHIAVSEGLYPFAEVLLNAGASVFATDRWGNTPLDEARTRGNKNLIRLLEVAKIFQSSGNNSDISEEIEGTS 741
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7368874 7394618 + CmoCh06G009510.1 Cmo06g00951 384513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00951 741 PANTHER POTASSIUM CHANNEL AKT1 68 727 IPR045319 GO:0005249|GO:0006813
Cmo06g00951 741 Gene3D - 512 638 IPR036770 -
Cmo06g00951 741 ProSiteProfiles cAMP/cGMP binding motif profile. 391 494 IPR000595 -
Cmo06g00951 741 CDD CAP_ED 391 505 IPR000595 -
Cmo06g00951 741 ProSiteProfiles Ankyrin repeat profile. 601 633 IPR002110 GO:0005515
Cmo06g00951 741 Pfam Cyclic nucleotide-binding domain 412 495 IPR000595 -
Cmo06g00951 741 Gene3D Jelly Rolls 378 503 IPR014710 -
Cmo06g00951 741 SUPERFAMILY Voltage-gated potassium channels 65 317 - -
Cmo06g00951 741 ProSiteProfiles Ankyrin repeat region circular profile. 568 600 - -
Cmo06g00951 741 ProSiteProfiles Ankyrin repeat profile. 665 697 IPR002110 GO:0005515
Cmo06g00951 741 Gene3D Helix hairpin bin 319 377 - -
Cmo06g00951 741 SMART ANK_2a 601 630 IPR002110 GO:0005515
Cmo06g00951 741 SMART ANK_2a 533 564 IPR002110 GO:0005515
Cmo06g00951 741 SMART ANK_2a 665 694 IPR002110 GO:0005515
Cmo06g00951 741 SMART ANK_2a 568 597 IPR002110 GO:0005515
Cmo06g00951 741 SMART ANK_2a 698 733 IPR002110 GO:0005515
Cmo06g00951 741 PRINTS EAG/ELK/ERG potassium channel family signature 107 117 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo06g00951 741 PRINTS EAG/ELK/ERG potassium channel family signature 216 226 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo06g00951 741 PRINTS EAG/ELK/ERG potassium channel family signature 264 281 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo06g00951 741 PRINTS EAG/ELK/ERG potassium channel family signature 308 317 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cmo06g00951 741 Pfam Ankyrin repeats (many copies) 652 706 IPR002110 GO:0005515
Cmo06g00951 741 ProSiteProfiles Ankyrin repeat profile. 568 600 IPR002110 GO:0005515
Cmo06g00951 741 ProSiteProfiles Ankyrin repeat region circular profile. 665 697 - -
Cmo06g00951 741 PANTHER CHANNEL AKT1 PROTEIN, PUTATIVE-RELATED 68 727 - -
Cmo06g00951 741 SMART cnmp_10 391 512 IPR000595 -
Cmo06g00951 741 Gene3D - 639 721 IPR036770 -
Cmo06g00951 741 SUPERFAMILY Ankyrin repeat 540 718 IPR036770 -
Cmo06g00951 741 Pfam Ion transport protein 73 316 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cmo06g00951 741 SUPERFAMILY cAMP-binding domain-like 320 507 IPR018490 -
Cmo06g00951 741 Pfam Ankyrin repeats (3 copies) 543 632 IPR002110 GO:0005515
Cmo06g00951 741 Gene3D - 72 318 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00951 Cmo-Chr6:7368874 Cmo15g00753 Cmo-Chr15:3699749 2.66E-11 dispersed
Cmo06g00951 Cmo-Chr6:7368874 Cmo04g02411 Cmo-Chr4:17941080 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00951 K21867 - jre:108993203 984.556