Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00953 ATGGAAAGGCTCCAAGGACCCATTAATCCTTCTTTTTATGGTGCCTGTTCTGACATGGGTTGCTCCAGACAAGAACTCTCGAGCTTGGAATTTGATGAATTTGACGAAGCGTATCTGTTTACGTCCAGTTTGGATGAGAAAATGCCGTTTCTTCACATGCTGCAATGTGTGGAGGAGCCATTCAAGGAGCCTAGCTTTCAGAACTTGCTGAAGCTGCAGCAGCACTTAAGCAATGACAAACCATGGAAACAGGAAGTTAACTCGGCTTCGTGTAGAGTGAGTCCAGAGTGCAACCAAAATGGAGGGTTATGCAGGACCCAAATGGAAAATGCTCCTCTACCCACTAAGGAAAGAAGGAAACGGAAGAGATTGAGACCAGCTAAGAACAAGGAAGAAGTGGAGAGCCAGAGAATGACCCATATCGCCGTCGAGCGCAACCGGCGACGCCAAATGAACGACCATCTCAACGTTATCAAGTCCCTCATACCCACTTCCTACATACAAAGGGGTGATCAGGCTTCCATAATTGGGGGCACAATAGACTTCGTGAAGGAATTGGAGCAGCTACTTGAATGCTTGGAAGCGCAGAGGAAAGAAAGGAAAGGAGAAGGAGAAGGAGATGAAGAAGGGTCACCCACATCCTCCTCGGCCACGGGAATGGCCTCAAATGGGAGAATAGGAGAAGGGGTTTGTGCAGAGGTGAAGTCAGAGGTGGGAGAGATAGAGGTGACCATGATTCAAGCCCATGTGAACTTGAAGATAAAATGTCCCAAAAGGCAAGGCCAATTGCTGAAAGCCATTGTTGCATTGGAAGATCTTAGGCTCAGTGTTTTGCACCTCAACATTAGTACTTCACAAGCCACTGCCACCGTGCTTTACTCCTTCAATCTAAGGATAGAAGATGAATGTAAGCTGGGATCAGCGGTGCAGATTGCAGGAGCAGTTCATGAAATATTAAGTTTCATAAGCGATGGCAGTCAAGTCAATGACGTGAAGGGAAATTTCAGGCAGTAG 1014 46.94 MERLQGPINPSFYGACSDMGCSRQELSSLEFDEFDEAYLFTSSLDEKMPFLHMLQCVEEPFKEPSFQNLLKLQQHLSNDKPWKQEVNSASCRVSPECNQNGGLCRTQMENAPLPTKERRKRKRLRPAKNKEEVESQRMTHIAVERNRRRQMNDHLNVIKSLIPTSYIQRGDQASIIGGTIDFVKELEQLLECLEAQRKERKGEGEGDEEGSPTSSSATGMASNGRIGEGVCAEVKSEVGEIEVTMIQAHVNLKIKCPKRQGQLLKAIVALEDLRLSVLHLNISTSQATATVLYSFNLRIEDECKLGSAVQIAGAVHEILSFISDGSQVNDVKGNFRQ 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7429841 7431488 + CmoCh06G009530.1 Cmo06g00953 384515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00953 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 128 199 IPR036638 GO:0046983
Cmo06g00953 337 Gene3D - 129 195 IPR036638 GO:0046983
Cmo06g00953 337 MobiDBLite consensus disorder prediction 115 138 - -
Cmo06g00953 337 PANTHER TRANSCRIPTION FACTOR BHLH70 84 323 - -
Cmo06g00953 337 MobiDBLite consensus disorder prediction 198 224 - -
Cmo06g00953 337 PANTHER MAX DIMERIZATION, MAD 84 323 - -
Cmo06g00953 337 Pfam Helix-loop-helix DNA-binding domain 136 187 IPR011598 GO:0046983
Cmo06g00953 337 SMART finulus 141 192 IPR011598 GO:0046983
Cmo06g00953 337 Coils Coil 183 203 - -
Cmo06g00953 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 135 186 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g00953 Cmo-Chr6:7429841 Cmo14g02236 Cmo-Chr14:15865527 2.44E-131 dispersed
Cmo06g00953 Cmo-Chr6:7429841 Cmo05g00543 Cmo-Chr5:2622030 5.74E-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9981 PF00010 HLH 4.10E-09 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00953 - - cmos:111464923 602.823