Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo06g00953 | ATGGAAAGGCTCCAAGGACCCATTAATCCTTCTTTTTATGGTGCCTGTTCTGACATGGGTTGCTCCAGACAAGAACTCTCGAGCTTGGAATTTGATGAATTTGACGAAGCGTATCTGTTTACGTCCAGTTTGGATGAGAAAATGCCGTTTCTTCACATGCTGCAATGTGTGGAGGAGCCATTCAAGGAGCCTAGCTTTCAGAACTTGCTGAAGCTGCAGCAGCACTTAAGCAATGACAAACCATGGAAACAGGAAGTTAACTCGGCTTCGTGTAGAGTGAGTCCAGAGTGCAACCAAAATGGAGGGTTATGCAGGACCCAAATGGAAAATGCTCCTCTACCCACTAAGGAAAGAAGGAAACGGAAGAGATTGAGACCAGCTAAGAACAAGGAAGAAGTGGAGAGCCAGAGAATGACCCATATCGCCGTCGAGCGCAACCGGCGACGCCAAATGAACGACCATCTCAACGTTATCAAGTCCCTCATACCCACTTCCTACATACAAAGGGGTGATCAGGCTTCCATAATTGGGGGCACAATAGACTTCGTGAAGGAATTGGAGCAGCTACTTGAATGCTTGGAAGCGCAGAGGAAAGAAAGGAAAGGAGAAGGAGAAGGAGATGAAGAAGGGTCACCCACATCCTCCTCGGCCACGGGAATGGCCTCAAATGGGAGAATAGGAGAAGGGGTTTGTGCAGAGGTGAAGTCAGAGGTGGGAGAGATAGAGGTGACCATGATTCAAGCCCATGTGAACTTGAAGATAAAATGTCCCAAAAGGCAAGGCCAATTGCTGAAAGCCATTGTTGCATTGGAAGATCTTAGGCTCAGTGTTTTGCACCTCAACATTAGTACTTCACAAGCCACTGCCACCGTGCTTTACTCCTTCAATCTAAGGATAGAAGATGAATGTAAGCTGGGATCAGCGGTGCAGATTGCAGGAGCAGTTCATGAAATATTAAGTTTCATAAGCGATGGCAGTCAAGTCAATGACGTGAAGGGAAATTTCAGGCAGTAG | 1014 | 46.94 | MERLQGPINPSFYGACSDMGCSRQELSSLEFDEFDEAYLFTSSLDEKMPFLHMLQCVEEPFKEPSFQNLLKLQQHLSNDKPWKQEVNSASCRVSPECNQNGGLCRTQMENAPLPTKERRKRKRLRPAKNKEEVESQRMTHIAVERNRRRQMNDHLNVIKSLIPTSYIQRGDQASIIGGTIDFVKELEQLLECLEAQRKERKGEGEGDEEGSPTSSSATGMASNGRIGEGVCAEVKSEVGEIEVTMIQAHVNLKIKCPKRQGQLLKAIVALEDLRLSVLHLNISTSQATATVLYSFNLRIEDECKLGSAVQIAGAVHEILSFISDGSQVNDVKGNFRQ | 337 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 7429841 | 7431488 | + | CmoCh06G009530.1 | Cmo06g00953 | 384515 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo06g00953 | 337 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 128 | 199 | IPR036638 | GO:0046983 | |
Cmo06g00953 | 337 | Gene3D | - | 129 | 195 | IPR036638 | GO:0046983 | |
Cmo06g00953 | 337 | MobiDBLite | consensus disorder prediction | 115 | 138 | - | - | |
Cmo06g00953 | 337 | PANTHER | TRANSCRIPTION FACTOR BHLH70 | 84 | 323 | - | - | |
Cmo06g00953 | 337 | MobiDBLite | consensus disorder prediction | 198 | 224 | - | - | |
Cmo06g00953 | 337 | PANTHER | MAX DIMERIZATION, MAD | 84 | 323 | - | - | |
Cmo06g00953 | 337 | Pfam | Helix-loop-helix DNA-binding domain | 136 | 187 | IPR011598 | GO:0046983 | |
Cmo06g00953 | 337 | SMART | finulus | 141 | 192 | IPR011598 | GO:0046983 | |
Cmo06g00953 | 337 | Coils | Coil | 183 | 203 | - | - | |
Cmo06g00953 | 337 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 135 | 186 | IPR011598 | GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo06g00953 | Cmo-Chr6:7429841 | Cmo14g02236 | Cmo-Chr14:15865527 | 2.44E-131 | dispersed | |
Cmo06g00953 | Cmo-Chr6:7429841 | Cmo05g00543 | Cmo-Chr5:2622030 | 5.74E-56 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
9981 | PF00010 | HLH | 4.10E-09 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo06g00953 | - | - | cmos:111464923 | 602.823 |