Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo06g00963 ATGGAAGGATCACAAAGATCAGAGCTTCCCAATTATCAACTTCAGGTCTCCTTCCTCTCAAATGCACCGCACCCTCAGCCCATCCACGAAATGGGGTTTCTCCATTTTGAAGACCACAATCAGGTTTTGAGCTTCTTGGCTCCTAATAACAACGCCGCCACAACCACTACTGCACCACCCACCACCACCGACACCACCACCACCGCCATGCCTTCTGCCTTCACTACCCCTCCTCACGCGCACCTCCTTAGTAGACCCTCTTGGAGCAACGACCAGGTGGGAACACTAGATCCAAAGCCCGGTGGCGATGAAAACTGCACTGGTAGCACCAGCGACGGCACCAATTCATGGTGGAGAAACTCCAACGCAGATAAGACCAAAGTTAAGGTCAGGAGAAAGCTGAGAGAACCGCGTTTCTGTTTCCAAACGAGAAGCGATGTCGATGTCCTCGACGACGGCTACAAATGGAGAAAATACGGCCAAAAAGTCGTCAAGAACAGTCTTCATCCACGAAGCTACTACCGTTGCACGCATAGCAACTGCCGTGTCAAGAAGAGGGTGGAGCGGCTGTCGGAGGATTGCCGGATGGTCATAACTACATACGAAGAACGCCGGTCCACAAAAATGGAGCAGAGCTTTATCATGATCAAGCCTGATGGAGTCCAGAGAGGACTGGTTGGAGAGATTATCAGTAGGTTTGAGAAGAAGGGCTTTGCTCTTAAAGGTTTGAAGCTTATGTCTGTGGATCGTGCTTTTGCTGAGAACCATTACTCAGATCTTGCTGGAAAGCCCTTCTTCAATGGTTTGATCGAGTACATCATTTCCGGCCCAGTCGTTGCCATGATCTGGGAGGGGAAGAATGTTGTTGCAACCGGTAGGAAGATCATTGGAGCCACCAAGCCAGCAGATTCTGATGTAGGAACCATCCGTGGTGACTTTGCAATTGATGTTGGCAGGAACATCATTCATGGAAGCGATTCCGTCGAAAGTGCGAGGAAGGAAATTGCTCTGTGGTTCTCGGAGGGCCCTGTTAACTGGCAGAGCAGCCTTCATTCTTGGATCTACGAGTGA 1071 50.33 MEGSQRSELPNYQLQVSFLSNAPHPQPIHEMGFLHFEDHNQVLSFLAPNNNAATTTTAPPTTTDTTTTAMPSAFTTPPHAHLLSRPSWSNDQVGTLDPKPGGDENCTGSTSDGTNSWWRNSNADKTKVKVRRKLREPRFCFQTRSDVDVLDDGYKWRKYGQKVVKNSLHPRSYYRCTHSNCRVKKRVERLSEDCRMVITTYEERRSTKMEQSFIMIKPDGVQRGLVGEIISRFEKKGFALKGLKLMSVDRAFAENHYSDLAGKPFFNGLIEYIISGPVVAMIWEGKNVVATGRKIIGATKPADSDVGTIRGDFAIDVGRNIIHGSDSVESARKEIALWFSEGPVNWQSSLHSWIYE 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7545161 7549479 + CmoCh06G009630.1 Cmo06g00963 384525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo06g00963 356 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 209 356 - -
Cmo06g00963 356 Pfam WRKY DNA -binding domain 151 203 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo06g00963 356 PANTHER NUCLEOSIDE DIPHOSPHATE KINASE 209 356 - -
Cmo06g00963 356 MobiDBLite consensus disorder prediction 104 120 - -
Cmo06g00963 356 Gene3D - 205 356 IPR036850 -
Cmo06g00963 356 SMART ndk_5 209 346 IPR034907 -
Cmo06g00963 356 PRINTS Nucleoside diphosphate kinase signature 320 339 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Cmo06g00963 356 PRINTS Nucleoside diphosphate kinase signature 297 313 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Cmo06g00963 356 PRINTS Nucleoside diphosphate kinase signature 276 293 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Cmo06g00963 356 PRINTS Nucleoside diphosphate kinase signature 212 234 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Cmo06g00963 356 PRINTS Nucleoside diphosphate kinase signature 256 275 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Cmo06g00963 356 CDD NDPk_I 210 339 - -
Cmo06g00963 356 ProSiteProfiles WRKY domain profile. 145 210 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo06g00963 356 SUPERFAMILY WRKY DNA-binding domain 142 204 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo06g00963 356 Gene3D WRKY domain 137 202 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo06g00963 356 SMART WRKY_cls 150 206 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo06g00963 356 Hamap Nucleoside diphosphate kinase [ndk]. 209 344 IPR001564 GO:0004550|GO:0006165|GO:0006183|GO:0006228|GO:0006241
Cmo06g00963 356 ProSitePatterns Nucleoside diphosphate kinases active site. 320 328 IPR023005 -
Cmo06g00963 356 Pfam Nucleoside diphosphate kinase 210 341 IPR034907 -
Cmo06g00963 356 SUPERFAMILY Nucleoside diphosphate kinase, NDK 209 356 IPR036850 -
Cmo06g00963 356 MobiDBLite consensus disorder prediction 77 120 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo03g01049 Cmo-Chr3:7826027 Cmo06g00963 Cmo-Chr6:7545161 4.30E-42 dispersed
Cmo04g00730 Cmo-Chr4:3633981 Cmo06g00963 Cmo-Chr6:7545161 1.62E-57 dispersed
Cmo06g00963 Cmo-Chr6:7545161 Cmo14g02238 Cmo-Chr14:15875010 5.17E-114 dispersed
Cmo06g00963 Cmo-Chr6:7545161 Cmo13g00816 Cmo-Chr13:7650878 2.68E-64 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
9987 PF00334 NDK 7.60E-53 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo06g00963 K00940 - cmax:111472906 369.777